Entering edit mode
Jenny Drnevich
★
2.2k
@jenny-drnevich-382
Last seen 10.3 years ago
Hi all,
This is more or less a FYI: I ran into an error when trying to use
duplicateCorrelation in limma along the lines of: function
"mixedModel2Fit"
not found (I didn't keep the exact text). This function didn't seem to
be
in limma, but since duplicateCorrelation called for package statmod, I
checked it. However, it wasn't in the statmod 1.2.0 that I had gotten
in
the middle of October. I checked CRAN and saw that there was a new
version
of statmod 1.2.3 put up on Dec. 12. I updated statmod and it did have
mixedModel2Fit. There hasn't been anything about this on Bioconductor,
so I
thought I put out a warning in case anyone else runs into the same
problem
and (hopefully) searches the archives...
Here's my sessionInfo (only statmod was changed):
R version 2.2.0, 2005-10-06, i386-pc-mingw32
attached base packages:
[1] "tools" "methods" "stats" "graphics" "grDevices"
"utils"
[7] "datasets" "base"
other attached packages:
RWinEdt affyPLM affydata limma gcrma
matchprobes
"1.7-3" "1.6.0" "1.6.0" "2.4.4" "2.2.0"
"1.2.1"
affy Biobase statmod
"1.8.1" "1.8.0" "1.2.3"
>
Cheers,
Jenny
Jenny Drnevich, Ph.D.
Functional Genomics Bioinformatics Specialist
W.M. Keck Center for Comparative and Functional Genomics
Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
330 ERML
1201 W. Gregory Dr.
Urbana, IL 61801
USA
ph: 217-244-7355
fax: 217-265-5066
e-mail: drnevich at uiuc.edu