Analysing Agilent single color array
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@carissimotigemit-3363
Last seen 10.3 years ago
Hi, I'm analysing Agilent single color array, what package can I use for reading and normalizing this type of data? Thank you in advance. Annamaria -- Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon Remember that it is always possible to send your donation Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx
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Yong Li ▴ 190
@yong-li-3321
Last seen 10.3 years ago
Hi Annamaria, I used the package Agi4x44PreProcess for Agilent one color data and it works fine. However, there is question about a function of it remain unanswered. https://stat.ethz.ch/pipermail/bioconductor/2009-June/028316.html Hope this helps. Yong carissimo at tigem.it wrote: > Hi, > > I'm analysing Agilent single color array, what package can I use for > reading and normalizing this type of data? > > Thank you in advance. > > Annamaria > > > -- > Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon > Remember that it is always possible to send your donation > > Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Dr. Yong Li University of Freiburg ZBSA, FRISYS Core Facility Data Management Habsburgerstrasse 49 D-79104 Freiburg Tel.: +49 761 203-97151 Fax: +49 761 203-97172 E-mail: yong.li at zbsa.uni-freiburg.de
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The read.maimages() function in limma can also read in Agilent one- color data. Wei Yong Li wrote: > Hi Annamaria, > > I used the package Agi4x44PreProcess for Agilent one color data and it > works fine. However, there is question about a function of it remain > unanswered. > > https://stat.ethz.ch/pipermail/bioconductor/2009-June/028316.html > > Hope this helps. > > Yong > > carissimo at tigem.it wrote: >> Hi, >> >> I'm analysing Agilent single color array, what package can I use for >> reading and normalizing this type of data? >> >> Thank you in advance. >> >> Annamaria >> >> >> -- >> Ricordate che e' sempre possibile contribuire alla raccolta fondi di >> Telethon >> Remember that it is always possible to send your donation >> >> Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >
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Hi,Li,

I'm trying to analysis Agilent single channel microarray with Agi4x44PreProcess, but it always informs me that it can only work for RGList, not EList. Anything I missed? Look forward to your reply.

Thanks!

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