Entering edit mode
Dear all, please would you advise :
given a list of chromosomes coordinates (i.e. BREAKPOINTS), and the list of genes promoters( i.e. TSS), how shall I get the closest gene TSS to a BREAKPOINT ? which function shall I use ?
I am looking for a similar function as closestBed in bedtools ...
thanks a lot,
-- bogdan
Another option is to use
join_nearest()
orpair_nearest()
fromplyranges