make CDF env
0
0
Entering edit mode
@wenqiong-chen-239
Last seen 10.1 years ago
Hi, I am a new user of BioConductor, and am currently working on Affy data analysis. I am trying to set up my own CDF package using the "makecdfenv" package. Here are the problems: -> Assuming that I have loaded the "makecdfenv" library, and stored the .CDF file in my current working directory, however, every time when I ran "R>make.cdf.package(my.CDF file), the error message I got was "the function creatPackage could not be found", disregarding what platform I used to run R, either unix or windows version. -> On the other hand, I was able to run R>make.cdf.env(my.CDF file) to simply creat the CDF environment. However, when I proceed to further analysis such as those functions in "affy" library, the error message I got was "Error in .local(object, ...) : Information about probe locations for XXXXXXXX could not be found. Try downloading the XXXXXXXX package from http://www.bioconductor.org/data/cdfenvs/cdfenvs.html". So it appeared that by just creating the environment is not enough and I still need the CDF package. My questions are the follows: 1) what is the function called "creatPackage"? Is this function supposed to be built inside the "makecdfenv" package? If not, how should I check or look for this function? 2) Is there anything else I should do to, in addition to just creating the environment, to make the CDF environment work? Thanks you very much for your help! joan
cdf probe cdf probe • 747 views
ADD COMMENT

Login before adding your answer.

Traffic: 430 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6