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@cristoforo-grasso-16658
Last seen 6.4 years ago
I am a beginner user of R and the Biocunductor packages. I am analysing RNA seq data, amang many pakages that I have installed thare is the Delayedarray package, of which I am having trouble to install. The output is a warning message. I wonder if you coud help me. Thank you in advance
There is a binary version available but the source version is later: binary source needs_compilation matrixStats 0.53.1 0.54.0 TRUE Binaries will be installed trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/matrixStats_0.53.1.zip' Content type 'application/zip' length 1632527 bytes (1.6 MB) downloaded 1.6 MB package ‘matrixStats’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\cgrasso\AppData\Local\Temp\RtmpkfIVn0\downloaded_packages Warning message: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘DelayedArray’ had non-zero exit status > BiocInstaller::biocValid() * sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 Matrix products: default locale: [1] LC_COLLATE=Dutch_Netherlands.1252 LC_CTYPE=Dutch_Netherlands.1252 [3] LC_MONETARY=Dutch_Netherlands.1252 LC_NUMERIC=C [5] LC_TIME=Dutch_Netherlands.1252 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] BiocInstaller_1.30.0 Biobase_2.40.0 Rsamtools_1.32.2 [4] GenomicRanges_1.32.6 GenomeInfoDb_1.16.0 Biostrings_2.48.0 [7] XVector_0.20.0 IRanges_2.14.10 S4Vectors_0.18.3 [10] BiocParallel_1.14.2 BiocGenerics_0.26.0 loaded via a namespace (and not attached): Error in x[["Version"]] : subscript out of bounds In addition: Warning message: In FUN(X[[i]], ...) : DESCRIPTION file of package 'yaml' is missing or broken > traceback() 10: FUN(X[[i]], ...) 9: lapply(X = X, FUN = FUN, ...) 8: sapply(L[[n]], function(x) x[["Version"]]) 7: mkLabel(x, "loadedOnly") 6: print(mkLabel(x, "loadedOnly"), quote = FALSE, ...) 5: print.sessionInfo(sessionInfo()) 4: print(sessionInfo()) 3: print.biocValid(result) 2: print(result) 1: BiocInstaller::biocValid() > sessionInfo() R version 3.5.1 (2018-07-02) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 Matrix products: default locale: [1] LC_COLLATE=Dutch_Netherlands.1252 LC_CTYPE=Dutch_Netherlands.1252 [3] LC_MONETARY=Dutch_Netherlands.1252 LC_NUMERIC=C [5] LC_TIME=Dutch_Netherlands.1252 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] BiocInstaller_1.30.0 Biobase_2.40.0 Rsamtools_1.32.2 [4] GenomicRanges_1.32.6 GenomeInfoDb_1.16.0 Biostrings_2.48.0 [7] XVector_0.20.0 IRanges_2.14.10 S4Vectors_0.18.3 [10] BiocParallel_1.14.2 BiocGenerics_0.26.0 loaded via a namespace (and not attached): Error in x[["Version"]] : subscript out of bounds In addition: Warning message: In FUN(X[[i]], ...) : DESCRIPTION file of package 'yaml' is missing or broken
To clarify, was this using
BiocInstaller::biocLite("DelayedArray")
?