Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
1
1
Entering edit mode
gaby8638 ▴ 20
@gaby8638-11595
Last seen 6.4 years ago
Mexico, LANGEBIO CINVESTAV, Irapuato

Hi I am trying to retrieve some experimental data from GEO using the R library GEOmetadb. When I try to get the database with the next code as the vignette says

library(GEOmetadb)
if(!file.exists('GEOmetadb.sqlite')) getSQLiteFile()

But I get the next error:

unable to connect to 'watson.nci.nih.gov' on port 80.--2018-07-10 16:23:51--  https://dl.dropboxusercontent.com/u/51653511/GEOmetadb.sqlite.gz
Resolving dl.dropboxusercontent.com (dl.dropboxusercontent.com)... 162.125.8.6, 2620:100:601b:6::a27d:806
Connecting to dl.dropboxusercontent.com (dl.dropboxusercontent.com)|162.125.8.6|:443... connected.
HTTP request sent, awaiting response... 404 Not Found
2018-07-10 16:23:52 ERROR 404: Not Found.

How can I solve it?

Thanks before hand!

 

 

geometadb GEO R bioconductor • 1.6k views
ADD COMMENT
1
Entering edit mode
@sean-davis-490
Last seen 3 months ago
United States

We have moved the hosting of the GEOmetadb sqlite database to the more stable Amazon Web Services. Upgrading the GEOmetadb package to the most recent release should fix the issue. 

ADD COMMENT
1
Entering edit mode

Hi! that did the work!
Thanks!!!

ADD REPLY

Login before adding your answer.

Traffic: 823 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6