Hi all,
I am experiencing difficulties. Ever since I installed the new version of R and RStudio I cannot get the next line to run. I hope someone can help me out. Best wishes, Marjolein.
> sc_all <- SCseq(input_merged_all)
Error: vector memory exhausted (limit reached?)
> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reshape2_1.4.3 vegan_2.5-2 permute_0.9-4 locfit_1.5-9.1 RColorBrewer_1.1-2 amap_0.8-16
[7] fpc_2.1-11 flexmix_2.3-14 lattice_0.20-35 mclust_5.4 cluster_2.0.7-1 MASS_7.3-49
[13] pheatmap_1.0.10 tsne_0.1-3 data.table_1.11.4 forcats_0.3.0 stringr_1.3.1 dplyr_0.7.5
[19] purrr_0.2.5 readr_1.1.1 tidyr_0.8.1 tibble_1.4.2 ggplot2_2.2.1 tidyverse_1.2.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.17 lubridate_1.7.4 mvtnorm_1.0-8 class_7.3-14 assertthat_0.2.0 psych_1.8.4
[7] R6_2.2.2 cellranger_1.1.0 plyr_1.8.4 stats4_3.5.0 httr_1.3.1 pillar_1.2.3
[13] rlang_0.2.1 lazyeval_0.2.1 diptest_0.75-7 readxl_1.1.0 rstudioapi_0.7 kernlab_0.9-26
[19] Matrix_1.2-14 foreign_0.8-70 munsell_0.5.0 broom_0.4.4 compiler_3.5.0 modelr_0.1.2
[25] pkgconfig_2.0.1 mnormt_1.5-5 mgcv_1.8-23 nnet_7.3-12 tidyselect_0.2.4 crayon_1.3.4
[31] grid_3.5.0 nlme_3.1-137 jsonlite_1.5 gtable_0.2.0 magrittr_1.5 scales_0.5.0
[37] cli_1.0.0 stringi_1.2.3 bindrcpp_0.2.2 robustbase_0.93-1 xml2_1.2.0 tools_3.5.0
[43] glue_1.2.0 trimcluster_0.1-2 DEoptimR_1.0-8 hms_0.4.2 parallel_3.5.0 colorspace_1.3-2
[49] prabclus_2.2-6 rvest_0.3.2 bindr_0.1.1 haven_1.1.1 modeltools_0.2-21
>
What package is SCseq() from? Is it a Bioconductor package? It may be helpful to add the package that is from in the tags so people who are knowledgeable about the package can assist you.