Error: vector memory exhausted (limit reached?)
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mdroog ▴ 10
@mdroog-13422
Last seen 5.9 years ago

Hi all, 

I am experiencing difficulties. Ever since I installed the new version of R and RStudio I cannot get the next line to run. I hope someone can help me out. Best wishes, Marjolein. 

> sc_all <- SCseq(input_merged_all)
 Error: vector memory exhausted (limit reached?)

 

> sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] reshape2_1.4.3     vegan_2.5-2        permute_0.9-4      locfit_1.5-9.1     RColorBrewer_1.1-2 amap_0.8-16       
 [7] fpc_2.1-11         flexmix_2.3-14     lattice_0.20-35    mclust_5.4         cluster_2.0.7-1    MASS_7.3-49       
[13] pheatmap_1.0.10    tsne_0.1-3         data.table_1.11.4  forcats_0.3.0      stringr_1.3.1      dplyr_0.7.5       
[19] purrr_0.2.5        readr_1.1.1        tidyr_0.8.1        tibble_1.4.2       ggplot2_2.2.1      tidyverse_1.2.1   

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.17      lubridate_1.7.4   mvtnorm_1.0-8     class_7.3-14      assertthat_0.2.0  psych_1.8.4      
 [7] R6_2.2.2          cellranger_1.1.0  plyr_1.8.4        stats4_3.5.0      httr_1.3.1        pillar_1.2.3     
[13] rlang_0.2.1       lazyeval_0.2.1    diptest_0.75-7    readxl_1.1.0      rstudioapi_0.7    kernlab_0.9-26   
[19] Matrix_1.2-14     foreign_0.8-70    munsell_0.5.0     broom_0.4.4       compiler_3.5.0    modelr_0.1.2     
[25] pkgconfig_2.0.1   mnormt_1.5-5      mgcv_1.8-23       nnet_7.3-12       tidyselect_0.2.4  crayon_1.3.4     
[31] grid_3.5.0        nlme_3.1-137      jsonlite_1.5      gtable_0.2.0      magrittr_1.5      scales_0.5.0     
[37] cli_1.0.0         stringi_1.2.3     bindrcpp_0.2.2    robustbase_0.93-1 xml2_1.2.0        tools_3.5.0      
[43] glue_1.2.0        trimcluster_0.1-2 DEoptimR_1.0-8    hms_0.4.2         parallel_3.5.0    colorspace_1.3-2 
[49] prabclus_2.2-6    rvest_0.3.2       bindr_0.1.1       haven_1.1.1       modeltools_0.2-21

software error • 3.4k views
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What package is SCseq() from?  Is it a Bioconductor package?  It may be helpful to add the package that is from in the tags so people who are knowledgeable about the package can assist you.
 

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