I'm having issues for loading libraries:
Step1:
library("oligo",lib.loc="~/R_LIB")
library("pd.huex.1.0.st.v2",lib.loc="~/R_LIB")
Error:
Loading required package: IRanges
Error: package or namespace load failed for ‘IRanges’:
Functions found when exporting methods from the namespace ‘IRanges’ which are not S4 generic: ‘endoapply’, ‘mendoapply’
Error: package ‘IRanges’ could not be loaded
Step2:
R CMD INSTALL IRanges_2.14.10.tar.gz -l ~/R_LIB Error : package ‘BiocGenerics’ 0.24.0 was found, but >= 0.25.3 is required by ‘IRanges’ ERROR: lazy loading failed for package ‘IRanges’ * removing ‘../..path_path....../R_LIB/IRanges’
If I upgrade BiocGenerics I'm afraid I'll have to change/upgrade many other packages, too. Is there a workaround of this which can minimize installations?
I tried to look for IRanges_2.13.X but in vain. I've Version: 2.12.0 Depends: R (>= 3.1.0), methods, utils, stats, BiocGenerics (>= 0.23.3),
S4Vectors (>= 0.15.5)
Bioconductor version '3.6'
SessionInfo() R version 3.4.2 other attached packages: [1] S4Vectors_0.18.2 BiocGenerics_0.24.0 loaded via a namespace (and not attached): [1] zlibbioc_1.24.0 compiler_3.4.2 affyio_1.48.0 Biobase_2.38.0
Thanks.
Thank you for your reply. That helps; I'd to downgrade certain packages that were too new for Bioconductor version '3.6'.