Hello everyone,
I have a count matrix which has 5 different tissue types. I did differential gene expression analysis to them as 2 samples each time (the analysis I need actually) but I am planning to generate heatmap, clustering analysis, PCA and SOM to all samples so I need normalized counts for each sample.
I used normTransform function to all data (designed as DESeq object but in the result list I could not find normalized values.
Is there any way to only have normalized values of a multi sample data without doing any analysis?
Thank you.