Entering edit mode
Lana Schaffer
★
1.3k
@lana-schaffer-1056
Last seen 10.3 years ago
Dr. MacDonald,
I have searched the archives for Bioconductor and have found that
other
researchers
have had the same problem with getting and installing the HGU133atag
probe
file.
I have not found a satisfactory answer and have spend most of today
trying
to build
and install this particular probe file. Perhaps our lives would be
made
easier if you
would supply us with the hgu133atag probe.
I have successfully installed this probe file in an older version.
Now I
have updated
to R 2.2.0 and Bioconductor 1.7 and Windows XP. and these problems
have
begun all over again.
I need to stick to the Windows version.
filename <- system.file("extdata",
"HG-U133A_tag_ProbeSequence_tab.gz",package = "matchprobes")
outdir <- tempdir()
me <- "Lana Schaffer "
makeProbePackage("HG-U133A_tag", datafile=gzfile(filename,open="r"),
outdir=outdir,maintainer=me,
version="0.0.1", check=FALSE,force=TRUE) or version="2.2.0"?
Successful!
# moved zipped
C:\DOCUME~1\ADMINI~1\LOCALS~1\Temp\Rtmp14299/hgu133atagprobe
to library directory
Upon installation:
#no package 'file8123' was found in: packageDescription(i, lib.loc =
lib,
field = "Title", encoding = "UTF-8")
#Error in gzfile(file, "r") : unable to open connection
#In addition: Warning messages:
#1: error -1 in extracting from zip file
#2: cannot open compressed file 'hgu133atagprobe/DESCRIPTION'
Upon trying the older probe package i built earlier:
#Error in gzfile(file, "r") : unable to open connection
#In addition: Warning messages:
#1: error -1 in extracting from zip file
#2: cannot open compressed file 'hgu133atagprobe/DESCRIPTION'
Lana Schaffer
Biostatistics/Informatics
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
schaffer at scripps.edu