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Please do not post to BioConductor and R mailing list simultaneously. If you show the output of sessionInfo() then you may get more useful information. Regards, Adai On Thu, 2005-11-10 at 09:51 -0700, Nayeem Quayum wrote: > Hello everybody, > I am trying to use mas5 to normalize some array data and using mas5 and > mas5calls. But I received these warning message. If anybody can explain the > problem I would really appreciate that. Thanks in advance. > background correction: mas > PM/MM correction : mas > expression values: mas > background correcting...Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > There were 14 warnings (use warnings() to see them) > Note: http://www.bioconductor.org/repository/devel/package/Win32 does not > seem to have a valid repository, skipping > Note: You did not specify a download type. Using a default value of: Source > This will be fine for almost all users > > Error in FUN(X[[1]], ...) : no slot of name "Uses" for this object of class > "localPkg" > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >

Nayeem Quayum wrote: > Hello everybody, > I am trying to use mas5 to normalize some array data and using mas5 and > mas5calls. But I received these warning message. If anybody can explain the > problem I would really appreciate that. Thanks in advance. > background correction: mas > PM/MM correction : mas > expression values: mas > background correcting...Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > Warning message: > 'loadURL' is deprecated. > Use 'load(url())' instead. > See help("Deprecated") > There were 14 warnings (use warnings() to see them) > Note: http://www.bioconductor.org/repository/devel/package/Win32 does not > seem to have a valid repository, skipping > Note: You did not specify a download type. Using a default value of: Source > This will be fine for almost all users > > Error in FUN(X[[1]], ...) : no slot of name "Uses" for this object of class > "localPkg" As Adai already noted, a sessionInfo() would be very helpful here. However, these sort of errors usually indicate incompatible BioC packages. A reasonable thing to do to fix this would be to get the latest version of R and then re-install BioC using the biocLite() script that can be sourced into R by source("http://www.bioconductor.org/biocLite.R") biocLite() Best, Jim > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor -- James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623