Hi,

is there a way to cluster rows of the heatmaps produced by featureAlignedHeatmap() from the ChipPeakAnno package by signal from left to right? This is a nice way to show co-binding of a second TF at regions centered at binding sites for the first TF.

Thanks for your input. 

Best, Deniz

The answer is no. You can only sort the feature.gr by the signals of the given samples. Default is the first sample. You can set sortBy with multiple samples.

Jianhong