I have 49 bam files aligned by STAR through Illumina and just wondering if there is any way to export BAM files from illumina without downloading, for example into R, if someone helps me to understand how to load my files into a single read table through summarizeOverlaps I would really appreciate.

Thanks,

myBam <-c ("trt_1.bam", "trt_2.bam",  "wt_1.bam","wt_2.bam")

bamLst <- BamFileList (myBam, yieldSize=2000000)

summarizeOverlaps(bamLst,......)

good luck