How to compare RNA-seq counts matrices from different aligners ?
0
1
Entering edit mode
Aurora ▴ 20
@aurora-15104
Last seen 6.0 years ago

I have used an aligner to produce raw counts from a publicRNA-seq data (GSE63310 , the counts are available online). I would like to compare my results with the "official ones" on the GEO website but I don't know how to compare accurately these two matrices to have an idea of their similarity.

Thank you for advices
rnaseq counts alignement • 1.1k views
ADD COMMENT •
0
Entering edit mode

Are they in the same id name? Are they for the same sample? Then you can do a PCA for each matrix, and compare the results. Are the same samples near the same other samples?

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 617 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6