Hi,
When trying to install phyloseq from :
source("http://bioconductor.org/biocLite.R")biocLite("phyloseq")I have got the following error :
> source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
Warning message:
Bioconductor version 3.4 is too old for R version 3.4.4; see
https://bioconductor.org/install/#troubleshoot-biocinstaller
> biocLite("phyloseq")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.4 (BiocInstaller 1.24.0), R 3.4.4 (2018-03-15).
Installing package(s) ‘phyloseq’
Warning: unable to access index for repository https://bioconductor.org/packages/3.4/bioc/bin/macosx/el-capitan/contrib/3.4:
impossible d'ouvrir l'URL 'https://bioconductor.org/packages/3.4/bioc/bin/macosx/el-capitan/contrib/3.4/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.4/data/annotation/bin/macosx/el-capitan/contrib/3.4:
impossible d'ouvrir l'URL 'https://bioconductor.org/packages/3.4/data/annotation/bin/macosx/el-capitan/contrib/3.4/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.4/data/experiment/bin/macosx/el-capitan/contrib/3.4:
impossible d'ouvrir l'URL 'https://bioconductor.org/packages/3.4/data/experiment/bin/macosx/el-capitan/contrib/3.4/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.4/extra/bin/macosx/el-capitan/contrib/3.4:
impossible d'ouvrir l'URL 'https://bioconductor.org/packages/3.4/extra/bin/macosx/el-capitan/contrib/3.4/PACKAGES'
installing the source package ‘phyloseq’
essai de l'URL 'https://bioconductor.org/packages/3.4/bioc/src/contrib/phyloseq_1.19.1.tar.gz'
Content type 'application/x-gzip' length 3291400 bytes (3.1 MB)
==================================================
downloaded 3.1 MB
* installing *source* package ‘phyloseq’ ...
** R
** data
** inst
** preparing package for lazy loading
Error : Functions found when exporting methods from the namespace ‘S4Vectors’ which are not S4 generic: ‘sd’, ‘t’, ‘var’
ERROR: lazy loading failed for package ‘phyloseq’
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/phyloseq’
The downloaded source packages are in
‘/private/var/folders/fs/vn6w_t8j1nj46ptf0k2gs2cw0000gn/T/Rtmp2BuXQ1/downloaded_packages’
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘phyloseq’ had non-zero exit status
>
Could you help me with this ?
Many thanks in advance!
Leïla
