Does anyone know if there is a good RNA-Seq data set that is reasonably large and has multiple factors included in its metadata?
For instance, the airway data set mentioned here, http://www.bioconductor.org/help/workflows/rnaseqGene/#starting-from-count-matrices , is nicely formatted for what I hope to do, but the coldata is pretty simple:
SampleName cell dex albut Run avgLength Experiment Sample BioSample
<factor> <factor> <factor> <factor> <factor> <integer> <factor> <factor> <factor>
SRR1039508 GSM1275862 N61311 untrt untrt SRR1039508 126 SRX384345 SRS508568 SAMN02422669
SRR1039509 GSM1275863 N61311 trt untrt SRR1039509 126 SRX384346 SRS508567 SAMN02422675
SRR1039512 GSM1275866 N052611 untrt untrt SRR1039512 126 SRX384349 SRS508571 SAMN02422678
SRR1039513 GSM1275867 N052611 trt untrt SRR1039513 87 SRX384350 SRS508572 SAMN02422670
SRR1039516 GSM1275870 N080611 untrt untrt SRR1039516 120 SRX384353 SRS508575 SAMN02422682
SRR1039517 GSM1275871 N080611 trt untrt SRR1039517 126 SRX384354 SRS508576 SAMN02422673
SRR1039520 GSM1275874 N061011 untrt untrt SRR1039520 101 SRX384357 SRS508579 SAMN02422683
SRR1039521 GSM1275875 N061011 trt untrt SRR1039521 98 SRX384358 SRS508580 SAMN02422677
I'm looking for something like this that has more factors to consider. In this case it's mostly cell and dex, but I would like there to be more factors. For instance, infection, tissue type, sex, batch#, time point, etc. Does anyone have any ideas about a good data set on bioconductor? Thanks very much!