The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.

The current list of deprecated packages is as follows:

Maintainer requested deprecation:

Software Package:

ontoCAT

spliceR (functionalities moved to IsoformSwitchAnalyzeR)

mvGST



Experiment Data Package:

RnaSeqTutorial

cheung2010

MEALData (replaced with brgedata)

Unresponsive/not-maintained packages:

Software:

GMRP

MBttest

OperaMate

ToPASeq

DASC

RamiGO

htSeqTools

PAnnBuilder

DMRScan

XBSeq

ToPASeq has transitioned to a new maintainer so we expect this to come out of deprecation before the release.

We did not announce that the following is also no longer available

Experiment Data Package: IlluminaHumanMethylation450k.db