is Biostrings being maintained?
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@marcus-g-daniels-1474
Last seen 10.2 years ago
Hello, Does anyone know if Biostrings is being maintained? I see the version number bumped between Bioconductor releases, but the maintainer's (Saikat Debroy) e-mail bounces at the University of Wisconsin. One thing I'd like to add support for matching amino acid strings. It seems to be partially implemented, so I wonder if anyone else has a later version than is to be included in 1.8. Alternatively, if anyone knows of an R package that already has the capability to do high-speed matching of multiple strings (with an amino acid alphabet), I'd appreciate the pointer. Thanks!
Biostrings Biostrings • 1.1k views
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rgentleman ★ 5.5k
@rgentleman-7725
Last seen 9.6 years ago
United States
Hi Marcus, Yes, sort of, if you want to send me code, or discuss off line, we are hoping to spend some time on new capabilities here over the next few months. And I will (thought I already had) change the maintainer info. Robert Marcus G. Daniels wrote: > Hello, > > Does anyone know if Biostrings is being maintained? I see the version > number bumped between Bioconductor releases, but the maintainer's > (Saikat Debroy) e-mail bounces at the University of Wisconsin. > > One thing I'd like to add support for matching amino acid strings. It > seems to be partially implemented, so I wonder if anyone else has a > later version than is to be included in 1.8. > > Alternatively, if anyone knows of an R package that already has the > capability to do high-speed matching of multiple strings (with an amino > acid alphabet), I'd appreciate the pointer. > > Thanks! > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > -- Robert Gentleman, PhD Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 PO Box 19024 Seattle, Washington 98109-1024 206-667-7700 rgentlem at fhcrc.org
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Dear all I am working on GeneR wich maybe partly overlap Biostring possibilities since its includes a lot of tools for sequence manipulation. This package allows to look for oligomer in huge sequences (i.e: a whole chromosome) and we are currently working on the windows version. Regards, Antoine Lucas Le Thu, 27 Oct 2005 17:03:54 -0700 Robert Gentleman <rgentlem at="" fhcrc.org=""> a ?crit: > Hi Marcus, > Yes, sort of, if you want to send me code, or discuss off line, > we are hoping to spend some time on new capabilities here over the > next few months. And I will (thought I already had) change the > maintainer info. > > Robert > > Marcus G. Daniels wrote: > > Hello, > > > > Does anyone know if Biostrings is being maintained? I see the version > > number bumped between Bioconductor releases, but the maintainer's > > (Saikat Debroy) e-mail bounces at the University of Wisconsin. > > > > One thing I'd like to add support for matching amino acid strings. It > > seems to be partially implemented, so I wonder if anyone else has a > > later version than is to be included in 1.8. > > > > Alternatively, if anyone knows of an R package that already has the > > capability to do high-speed matching of multiple strings (with an amino > > acid alphabet), I'd appreciate the pointer. > > > > Thanks! > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > > > -- > Robert Gentleman, PhD > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M2-B876 > PO Box 19024 > Seattle, Washington 98109-1024 > 206-667-7700 > rgentlem at fhcrc.org > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > -- Antoine Lucas Centre de g?n?tique Mol?culaire, CNRS 91198 Gif sur Yvette Cedex Tel: (33)1 69 82 38 89 Fax: (33)1 69 82 38 77
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