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chiara.rigobello
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@chiararigobello-15139
Last seen 6.7 years ago
Hi , I'm having an error in exomeCopy when I computate fit.
(No previous error, following the vignette, and with provided data).
> fit <- exomeCopy(counts[seqnames(counts) ==
+ "chr1"], sample.name = "BIR", X.names = c("log.bg",
+ "GC", "GC.sq", "width"), S = 0:6, d = 2)
Error in exomeCopy(counts[seqnames(counts) == "chr1"], sample.name = "BIR", :
sample.name is not a column in rdata.
I've tried to check all objects containing name, but probably I've missed something!
any suggestion is appreciated
chiara
I know that the problem is in that.
If I look at
colnames(mcols(counts))
[1] "BIP" "BIR" "BIQ" "AWI" "AWJ" "AWK" "AWL" "AWM"
[9] "BQ0" "GC" "GC.sq" "bg" "log.bg" "wdth" "bg.var"
(That message is somewhat outdated because we no longer use RangedData but now GRanges.) --> how can I verified this?
Sorry, but I'm a self-taught in bioinformatics.
thanks for your help
And are you using version 1.24 (the most recent version)?