Hi I am trying to install the gage data package from bioconductor:
source("https://bioconductor.org/biocLite.R")
biocLite("gageData")
However I got this error during installation (see below). I have not idea how to solve this problem. Any suggestion?
ALe
##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.
The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Error in library("gageData") : there is no package called ‘gageData’
Execution halted
The downloaded source packages are in
‘/private/var/folders/83/rzpdd5ts59xddl4ql9_jv1zw0000gp/T/Rtmpcy1kZi/downloaded_packages’
Warning messages:
1: In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘gageData’ had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘mgcv’ had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘openssl’ had non-zero exit status
4: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘quantreg’ had non-zero exit status
5: In install.packages(update[instlib == l, "Package"], l, repos = repos, :
installation of package ‘RcppEigen’ had non-zero exit status
