Prevent "New version" message to appear
1
@nick-10781
Last seen 6.8 years ago
How can you prevent the following message from displaying in the console?
I've tried both suppressMessages and suppressStartUpMessages with no success.
"Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help
A new version of Bioconductor is available after installing the most recenthttp://bioconductor.org/install "
package
• 1.1k views
@martin-morgan-1513
Last seen 4 months ago
United States
I guess you're trying
> suppressMessages(library(BiocInstaller))
or
> suppressMessages(source("https://bioconductor.org/biocLite.R"))
> sessionInfo()
R version 3.3.2 Patched (2017-02-14 r72175)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.24.0
Both 'work for me', so can you provide additional information, e.g., about your sessionInfo() and how (e.g., in RStudio?) you're seeing the message?
before adding your answer.
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You're right. I was looking for the problem in the wrong place. I though the message was appearing when launching a parallel execution of a function while actually it was due to the presence of source("https://bioconductor.org/biocLite.R") in my .Rprofile. Silly me, but thanks for helping me.