Hey all, My AnnBuilder makeSourceData() function won't work because wget requires the --passive-ftp in order to download from ftp.ncbi.nih.gov, however, I can't seem to find the getPubDataXXX functions anywhere in the the AnnBuilder directory other than help files. Can anyone tell me where I can find the code for the getPubDataXXX functions (getPubDataGo?)? Is there a way in R to get it to print out the location of the files that it's using? Thanks, Denise

Hi Denise, First of all, could you please report the output of sessionInfo()? This information is critical for people to determine the possible sources of problems. getPubDataXXX are in the file "downloadSourceData.R" which locates at the AnnBuilder/R subdirectory. There is a file called "mirroringDataResources.rst" in AnnBuilder/inst/doc. You can get more details about how to use downloadSourceData() in this document. BTW, here is my sessionInfo() output: > sessionInfo() R version 2.2.0, 2005-10-05, x86_64-unknown-linux-gnu attached base packages: [1] "tools" "methods" "stats" "graphics" "grDevices" "utils" [7] "datasets" "base" other attached packages: AnnBuilder annotate XML Biobase "1.6.38" "1.6.5" "0.97-0" "1.7.6" > Please remember to update your R/packages if you are using old R/packages. This might help to solve your question. HTH, Ting-Yuan On Mon, 10 Oct 2005, Denise Mauldin wrote: > > Hey all, > > My AnnBuilder makeSourceData() function won't work because wget requires > the --passive-ftp in order to download from ftp.ncbi.nih.gov, however, I > can't seem to find the getPubDataXXX functions anywhere in the the > AnnBuilder directory other than help files. > > Can anyone tell me where I can find the code for the getPubDataXXX > functions (getPubDataGo?)? Is there a way in R to get it to print out the > location of the files that it's using? > > Thanks, > Denise > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor >