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fawazfebin
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@fawazfebin-14053
Last seen 4.3 years ago
Hi
I was analysing TNBC datasets from TCGA using TCGAbiolinks . The following error was obtained while downloading the data :
> GDCdownload(query = queryDown, + directory = DataDirectory) Downloading data for project TCGA-BRCA GDCdownload will download: 1.844745499 GB Executing GDC client with the following command: C:\Users\Febin\DOCUME~1\GDC-CL~1.EXE download -m gdc_manifest.txt Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5
> sessionInfo() R version 3.4.3 (2017-11-30) Platform: i386-w64-mingw32/i386 (32-bit) Running under: Windows >= 8 (build 9200) Matrix products: default locale: [1] LC_COLLATE=English_India.1252 LC_CTYPE=English_India.1252 [3] LC_MONETARY=English_India.1252 LC_NUMERIC=C [5] LC_TIME=English_India.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] TCGAbiolinks_2.7.9 loaded via a namespace (and not attached): [1] httr_1.3.1 jsonlite_1.5 [3] GetoptLong_0.1.6 munsell_0.4.3 [5] latticeExtra_0.6-28 dplyr_0.7.4 [7] DESeq_1.30.0 pillar_1.0.1 [9] pkgconfig_2.0.1 R.utils_2.6.0 [11] compiler_3.4.3 DBI_0.7 [13] lazyeval_0.2.1 hms_0.4.0 [15] survMisc_0.5.4 tibble_1.4.1 [17] zoo_1.8-0 R6_2.2.2 [19] sva_3.26.0 ShortRead_1.36.0 [21] BiocGenerics_0.24.0 BiocInstaller_1.28.0 [23] data.table_1.10.4-3 annotate_1.56.1 [25] xtable_1.8-2 circlize_0.4.3 [27] tools_3.4.3 stringr_1.2.0 [29] rtracklayer_1.38.2 shape_1.4.3 [31] R.oo_1.21.0 AnnotationDbi_1.40.0 [33] Biobase_2.38.0 git2r_0.20.0 [35] nlme_3.1-131 prettyunits_1.0.2 [37] foreach_1.4.4 digest_0.6.13 [39] GenomeInfoDb_1.14.0 codetools_0.2-15 [41] cmprsk_2.2-7 rvest_0.3.2 [43] withr_2.1.1 stats4_3.4.3 [45] downloader_0.4 devtools_1.13.4 [47] GenomicAlignments_1.14.1 km.ci_0.5-2 [49] genefilter_1.60.0 scales_0.5.0 [51] memoise_1.1.0 stringi_1.1.6 [53] xml2_1.1.1 locfit_1.5-9.1 [55] mgcv_1.8-22 R.methodsS3_1.7.1 [57] limma_3.34.5 assertthat_0.2.0 [59] GlobalOptions_0.0.12 purrr_0.2.4 [61] GenomeInfoDbData_1.0.0 ggthemes_3.4.0 [63] lattice_0.20-35 bit64_0.9-7 [65] Rcpp_0.12.14 rjson_0.2.15 [67] bindrcpp_0.2 ggrepel_0.7.0 [69] ggplot2_2.2.1 KMsurv_0.1-5 [71] grid_3.4.3 blob_1.1.0 [73] GenomicRanges_1.30.0 plyr_1.8.4 [75] survival_2.41-3 edgeR_3.20.5 [77] psych_1.7.8 DelayedArray_0.4.1 [79] mnormt_1.5-5 tidyr_0.7.2 [81] ComplexHeatmap_1.17.1 matrixStats_0.52.2 [83] glue_1.2.0 magrittr_1.5 [85] S4Vectors_0.16.0 selectr_0.3-1 [87] SummarizedExperiment_1.8.1 Biostrings_2.46.0 [89] gridExtra_2.3 curl_3.1 [91] parallel_3.4.3 ggpubr_0.1.6 [93] biomaRt_2.34.1 RSQLite_2.0 [95] knitr_1.18 gtable_0.2.0 [97] zlibbioc_1.24.0 colorspace_1.3-2 [99] geneplotter_1.56.0 cluster_2.0.6 [101] aroma.light_3.8.0 XVector_0.18.0 [103] matlab_1.0.2 RCurl_1.95-4.8 [105] bitops_1.0-6 RColorBrewer_1.1-2 [107] progress_1.1.2 Matrix_1.2-12 [109] foreign_0.8-69 bit_1.1-12 [111] GenomicFeatures_1.30.0 hwriter_1.3.2 [113] readr_1.1.1 doParallel_1.0.11 [115] IRanges_2.12.0 bindr_0.1 [117] broom_0.4.3 reshape2_1.4.3 [119] ConsensusClusterPlus_1.42.0 XML_3.98-1.9 [121] survminer_0.4.1 EDASeq_2.12.0 [123] iterators_1.0.9 splines_3.4.3 [125] rlang_0.1.6 BiocParallel_1.12.0 [127] RMySQL_0.10.13 Rsamtools_1.30.0
Any possible solution please ? Thanks in advance.