Im wondering if there is an easy way to get a list of all R packages that are currently using RangedSummarizedExperiment object inputs?
Thanks!
Im wondering if there is an easy way to get a list of all R packages that are currently using RangedSummarizedExperiment object inputs?
Thanks!
Do you need RangedSummarizedExperiment
specifically? If not, then you could always look at the reverse-dependencies (and reverse-imports, and reverse-suggests) at https://bioconductor.org/packages/SummarizedExperiment. Presumably all of the listed packages use SummarizedExperiment
or its subclasses. Any method/function written for a SummarizedExperiment
would also work on an RSE object, so those packages would fit your criterion even if they're not written explicitly for RSE inputs. The only packages that don't fit would be those that derive a new, non-RSE class from SummarizedExperiment
; I don't think there's an easy way of pruning them out other than to manually inspect them.
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Thanks, what I was looking for!