Question

Anova test on gene expression data

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sally_b86 • 0

@sally_b86-13975

Last seen 6.0 years ago

Hi,

Anyone knows a way to conduct anova test on gene expression data other than the DESeq2 and Limma package?

Thank you

Anova gene expression • 1.5k views

ADD COMMENT • link updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by sally_b86 • 0

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Is there any reason why you don't want to use the Bioconductor packages designed to do this?

ADD REPLY • link 7.0 years ago Gordon Smyth 51k

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Actually I already did the first statistical filtering based on DESeq2 function, I want to do further analysis on the filtered genes but by Anova test on data normalized by DESeq2 on different conditions.

ADD REPLY • link 7.0 years ago sally_b86 • 0

score 0 · Answer 1 · 2017-11-15

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James W. MacDonald 67k

@james-w-macdonald-5106

Last seen 15 hours ago

United States

Sure. You could just use lm from the base package.

ADD COMMENT • link 7.0 years ago James W. MacDonald 67k