I'm analysis the Illumina 450k methylation data using Rnbeads.
I came across this error. I need help to rectify this error
The command which I've used :
>rnb.set<-rnb.run.analysis(dir.reports=report.dir, sample.sheet=sample.annotation,data.dir=idat.dir, data.type="infinium.idat.dir")
After 5 hours it shows the error like this.
Error:
2017-11-11 22:43:21 10.7 INFO Mapping 3 traits to point colors and types
2017-11-11 22:44:02 10.7 ERROR Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot allocate memory'
Error in logger.error(em) :
Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot allocate memory'
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Thanks in advance.
did you ever figure this out? I'm having same issue. Was it just not enough space on analysis drive?