Question

update TCGAbiolinks to version 3.6 and GDCquery doesn't work

0

Entering edit mode

sechenmo • 0

@sechenmo-13929

Last seen 6.4 years ago

The error info is just like :Error in checkProjectInput(project) :
Please set a valid project argument from the column id above. Project TARGET-AML was not found.

software error tcgabiolinks • 1.4k views

ADD COMMENT • link updated 7.1 years ago by eshelden ▴ 40 • written 7.1 years ago by sechenmo • 0

1

Entering edit mode

Hi, I just update the release version with the fixes from devel. It should be working in a couple of days.

For the moment could you use the github version?

You can install it with  devtools::install_github(repo = "BioinformaticsFMRP/TCGAbiolinks")

ADD REPLY • link 7.1 years ago Tiago Chedraoui Silva ▴ 260

0

Entering edit mode

Thank you very much!

ADD REPLY • link 7.1 years ago sechenmo • 0

0

Entering edit mode

Please include more information: the commands run with output and your `sessionInfo()`.

ADD REPLY • link 7.1 years ago shepherl 4.1k

0

Entering edit mode

could this be a duplicate? TCGAbiolinks GDCquery Error: Parsing problems

ADD REPLY • link 7.1 years ago Ramiro Magno ▴ 100

score 0 · Answer 1 · 2017-11-07

0

Entering edit mode

eshelden ▴ 40

@eshelden-14132

Last seen 5.5 years ago

Try installing the most recent version from github.

https://github.com/BioinformaticsFMRP/TCGAbiolinks

ADD COMMENT • link 7.1 years ago eshelden ▴ 40