Question

issue with FEA - Gene-Term Linker in FGNet package

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Seymoo • 0

@seymoo-12522

Last seen 12 weeks ago

Oslo

`

serverWS = "http://gtlinker.cnb.csic.es:8182"

` in fea_gtLinker() function is not responding. R throws error below

`

Error in function (type, msg, asError = TRUE)  : 
  Failed to connect to gtlinker.cnb.csic.es port 8182: Timed out

`

Anyone has similar problem?

FGNet • 1.6k views

ADD COMMENT • link updated 7.1 years ago by saibar ▴ 20 • written 7.1 years ago by Seymoo • 0

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Hello. I keep getting the same error message and for similar reasons (apparently) also cannot use DAVID for fea on FGNet. Does anyone have an answer for it? Is there any other mirror for GTLinker? I would like to replicate past analyses and would really appreciate advice on how to use FGNet when GTLinker is down. For DAVID I get the "illegal characters found in URL" and I have tried to find a solution but with no success. I am positive I just don't know how to provide the proper URL. Thank you.

ADD REPLY • link 6.1 years ago duonlumo • 0

score 1 · Accepted Answer · 2017-10-24

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saibar ▴ 20

@saibar-7798

Last seen 6.5 years ago

University of Salamanca, Spain / VIB-KU…

Gene-Term Linker server is down. We have contacted the maintainer, and it will hopefully be working again within a few hours/days.

Sorry for the inconvenience.

ADD COMMENT • link 7.1 years ago saibar ▴ 20

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Can this be done again? Thank you.

ADD REPLY • link 6.1 years ago duonlumo • 0

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The server is now back online but I keep getting the error "Error in reply$analyzeResponse : $ operator is invalid for atomic vectors" which I reckon is related to retrieving the Job ID... Any advice, please?

ADD REPLY • link 6.1 years ago duonlumo • 0

score 1 · Accepted Answer · 2017-10-24

1

Entering edit mode

saibar ▴ 20

@saibar-7798

Last seen 6.5 years ago

University of Salamanca, Spain / VIB-KU…

GeneTerm Linker (http://gtlinker.cnb.csic.es/) is now working again.

ADD COMMENT • link 7.1 years ago saibar ▴ 20