LPE pools the variance of genes showing similar intensities, so it is useful irrespective of the preprocessing step. Best, Nitin ______________________ Nitin Jain, PhD <nitin.jain at="" pfizer.com=""> Non Clinical Statistics Pfizer, Inc. (Groton, CT) Bldg: 260, # 1451 Ph: (860) 686-2526 (Office) Fax: (860) 686-6170 -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of Devarajan, Karthik Sent: Tuesday, August 30, 2005 4:27 PM To: 'bioconductor at stat.math.ethz.ch' Subject: [BioC] LPE method based on RMA vs. MAS5 Hello I was wondering if anyone has experience applying LPE on RMA processed data, and if so, how it compared with results based on MAS5. Thanks, Karthik. [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor LEGAL NOTICE\ Unless expressly stated otherwise, this messag...{{dropped}}