Error in xy.coords(x, y, xlabel, ylabel, log)
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mictadlo ▴ 10
@mictadlo-10885
Last seen 4.9 years ago

Hi, I tried to plot the graph from showSigOfNodes but I got the following error:

 goNodes <- showSigOfNodes(sampleGOdata, 
+                score(resultKS.elim), 
+                firstSigNodes = 5, 
+                useInfo='all')
> svg(paste(comparisons,"-goNodes.svg"))
> plot(goNodes)
Error in xy.coords(x, y, xlabel, ylabel, log) : 
  'x' is a list, but does not have components 'x' and 'y'
> dev.off()
RStudioGD 
        2

What did I miss?

Thank you in advance

topgo svg • 3.1k views
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Entering edit mode
mictadlo ▴ 10
@mictadlo-10885
Last seen 4.9 years ago

Solution: printGraph(sampleGOdata, resultKS.elim, firstSigNodes = 5, fn.prefix = "tGO", useInfo = "all", pdfSW = TRUE)

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