Building BiocGenerics with the admittedly very new R 3.4.2 causes failures in unit tests of at least IRanges and VariantAnnotation.
IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures ERROR in test_AtomicList_general: Error in match.arg(method) : 'arg' must be of length 1 ERROR in test_AtomicList_numerical: Error in match.arg(method) : 'arg' must be of length 1 VariantAnnotation RUnit Tests - 80 test functions, 1 error, 0 failures ERROR in test_VRanges_vcf: Error in match.arg(method) : 'arg' must be of length 1
Any suggestions on how to troubleshoot this further?
Hi,
After installing R 3.4.2 I was able to reproduce this. The upgrade to R 3.4.2 also caused many other failures in many other Bioconductor packages. We advice users to NOT upgrade their installation to R 3.4.2 while we investigate this.
Cheers,
H.
Thanks for confirming! Sorry, I didn't see your reply until I had already sent the follow up comment.