I am trying to install and load TCGAbiolinks. It was working before, but probably due to some package that was installed, it suddenly stopped working. This happened before, but unninstalling and reinstalling R and RStudio solved the problem. But not now...
I already tried unninstalling R and RStudio twice, to no avail. The last time I installed ROpen 3.4 and RStudio-1.1.359.
> biocLite("TCGAbiolinks") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.0 (2017-04-21). Installing package(s) ‘TCGAbiolinks’ There is a binary version available but the source version is later: binary source needs_compilation TCGAbiolinks 2.4.3 2.5.7 FALSE installing the source package ‘TCGAbiolinks’ trying URL 'https://bioconductor.org/packages/3.5/bioc/src/contrib/TCGAbiolinks_2.5.7.tar.gz' Content type 'application/x-gzip' length 48880035 bytes (46.6 MB) downloaded 46.6 MB * installing *source* package 'TCGAbiolinks' ... ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading Error : object 'rbind.gtable' is not exported by 'namespace:gridExtra' ERROR: lazy loading failed for package 'TCGAbiolinks' * removing 'C:/Program Files/Microsoft/R Open/R-3.4.0/library/TCGAbiolinks' The downloaded source packages are in ‘C:\Users\ui.ent\AppData\Local\Temp\RtmpM1UrrV\downloaded_packages’ Warning messages: 1: running command '"C:/PROGRA~1/MICROS~3/ROPEN~1/R-34~1.0/bin/x64/R" CMD INSTALL -l "C:\Program Files\Microsoft\R Open\R-3.4.0\library" C:\Users\UI~1.EN\AppData\Local\Temp\RtmpM1UrrV/downloaded_packages/TCGAbiolinks_2.5.7.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘TCGAbiolinks’ had non-zero exit status