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3 years, 8 months ago
The city by the bay
Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
4 years, 8 months ago
The city by the bay
A: Suggestion for next revision of edgeR User Guide re Design matrix setup
4 years, 9 months ago
The city by the bay
A: featAssayPlotDefaults does not work for SummarizedExperiment object
5 years, 3 months ago
The city by the bay
A: could not find function "plotQC" in scater package
5 years, 3 months ago
The city by the bay
A: Further clarification on when not to use duplicateCorrelation with technical rep
5 years, 4 months ago
The city by the bay
A: Different number of marker genes between same clusters
5 years, 6 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 6 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 6 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
5 years, 6 months ago
The city by the bay
A: normalization of RNA-seq data after over-expressing the transcription factors
5 years, 6 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 6 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 6 months ago
The city by the bay
A: Complex multifactorial design with random effects in Limma/voom
5 years, 7 months ago
The city by the bay
A: scRNA-seq : Classification of cell cycle phase
5 years, 7 months ago
The city by the bay
A: Re-numbering blocking IDs on paired samples with duplicateCorrelation or design
5 years, 8 months ago
The city by the bay
A: logCPM to CPM conversion after removeBatchEffect()
5 years, 8 months ago
The city by the bay
A: Gene expression associated with continuous (quantitative) traits (Limma/edgeR/co
5 years, 8 months ago
The city by the bay
C: Correct use of tximport in combination with edgeR cpm()
5 years, 9 months ago
The city by the bay
A: Some questions for remove batch effect by using mnnCorrect
5 years, 9 months ago
The city by the bay
A: EdgeR between/within comparisons (3.5) with nested non-balanced data set
5 years, 9 months ago
The city by the bay
A: Usage of doubletCells() function before or after the batch correction?
5 years, 10 months ago
The city by the bay
A: Experimental design RNAseq differential expression
5 years, 10 months ago
The city by the bay
A: subset samples for RNAseq differential analysis
5 years, 10 months ago
The city by the bay
A: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
5 years, 10 months ago
The city by the bay
A: What are the methods to get count data per cell from single cell fastq given onl
5 years, 10 months ago
The city by the bay
A: How to identify real cells in 10X RNA-seq ?
5 years, 11 months ago
The city by the bay
A: Limma model with different intercepts/references
5 years, 11 months ago
The city by the bay
A: edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
6 years ago
The city by the bay
Differential gene expression for multi-factorial experiment using edgeR
6 years ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
6 years ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years ago
The city by the bay
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
6 years ago
The city by the bay
Re-numbering blocking IDs on paired samples with duplicateCorrelation or design covariate
6 years ago
The city by the bay
Correct use of tximport in combination with edgeR cpm()
6 years ago
The city by the bay
scran: Are the log counts expression comparable among different genes within a sample/cell ?
6 years ago
The city by the bay
limma-voom duplicateCorrelation once or twice, difference?
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