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following contributors:
5 years, 7 months ago
United States
A: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5 years, 7 months ago
United States
A: Adjusting for known covariates before coexpression analysis with WGCNA
5 years, 7 months ago
EMBL Heidelberg
A: 'biomaRt expected a character string of length 1' error with getBM and reseq mrn
5 years, 8 months ago
The city by the bay
A: Gene expression associated with continuous (quantitative) traits (Limma/edgeR/co
5 years, 8 months ago
The city by the bay
C: Correct use of tximport in combination with edgeR cpm()
5 years, 8 months ago
United States
A: Is it appropriate to use DESeq2 to analyse MinION data that's been mapped to a t
5 years, 8 months ago
WEHI, Melbourne, Australia
A: How to get t-statistic values using edgeR?
5 years, 8 months ago
Seattle, WA, United States
A: Rsamtools v 1.99.6 installation error
5 years, 8 months ago
United States
A: WGCNA - networking RNA seq gives only one module!
5 years, 8 months ago
The city by the bay
A: Some questions for remove batch effect by using mnnCorrect
5 years, 8 months ago
Australia/Melbourne
A: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5 years, 8 months ago
United States
A: Gene Ontology link in aaf.handler() not working
5 years, 8 months ago
WEHI, Melbourne, Australia
A: limma voom Mean-variance trend plot: x-axis?
5 years, 9 months ago
The city by the bay
A: EdgeR between/within comparisons (3.5) with nested non-balanced data set
5 years, 9 months ago
United States
A: How to add my own Entrez Gene IDs rather than using the ones from a default pack
5 years, 9 months ago
The city by the bay
A: Usage of doubletCells() function before or after the batch correction?
5 years, 9 months ago
5 years, 9 months ago
WEHI, Melbourne, Australia
A: moderated p-values limma style from std.error, df, estimate data.
5 years, 9 months ago
United States
A: No method for coercing this S4 class to a vector, as trying to import my own dat
5 years, 9 months ago
United States
A: dtuScaledTPM vs lengthScaledTPM in DTU analysis
5 years, 9 months ago
San Diego
A: Appropriate experimental design for differential expresion
5 years, 9 months ago
The city by the bay
A: Experimental design RNAseq differential expression
5 years, 10 months ago
The city by the bay
A: subset samples for RNAseq differential analysis
5 years, 10 months ago
The city by the bay
A: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
5 years, 10 months ago
United States
A: Limma - Using removeBatchEffect before differential expression analysis
5 years, 10 months ago
The city by the bay
A: What are the methods to get count data per cell from single cell fastq given onl
5 years, 10 months ago
The city by the bay
A: How to identify real cells in 10X RNA-seq ?
5 years, 10 months ago
Seattle, WA, United States
A: Using GenomicFeatures to extract the upstream and downstream region of a transcr
5 years, 10 months ago
The city by the bay
A: Limma model with different intercepts/references
5 years, 10 months ago
Wageningen University, Wageningen, the …
A: run LIMMA package encounts clariomdhumancdf error
5 years, 10 months ago
WEHI, Melbourne, Australia
A: Featurecount -- normalized Path error
5 years, 10 months ago
United States
A: DESeq2 w. pathway/network info as a prior knowledge
5 years, 11 months ago
The city by the bay
A: edgeR /DESeq2 normalization for differential expression in RNA-seq blood samples
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom
5 years, 11 months ago
United States
A: Detect genes that moved up or down over time in the same way in multiple strains
5 years, 12 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
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