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following contributors:
5 years, 9 months ago
WEHI, Melbourne, Australia
A: Removing batch effect with limma::removeBatchEffect() actually exacerbates the e
5 years, 9 months ago
The city by the bay
A: Re-numbering blocking IDs on paired samples with duplicateCorrelation or design
5 years, 9 months ago
WEHI, Melbourne, Australia
A: Any efficient workaround to identify highly variable genes in Affymetrix microar
5 years, 9 months ago
United States
A: Removing batch effect with limma::removeBatchEffect() actually exacerbates the e
5 years, 10 months ago
The city by the bay
A: logCPM to CPM conversion after removeBatchEffect()
5 years, 10 months ago
United States
A: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5 years, 10 months ago
United States
A: Adjusting for known covariates before coexpression analysis with WGCNA
5 years, 10 months ago
EMBL Heidelberg
A: 'biomaRt expected a character string of length 1' error with getBM and reseq mrn
5 years, 10 months ago
The city by the bay
A: Gene expression associated with continuous (quantitative) traits (Limma/edgeR/co
5 years, 10 months ago
The city by the bay
C: Correct use of tximport in combination with edgeR cpm()
5 years, 10 months ago
United States
A: Tximport and pseudo alignment with Kallisto
5 years, 11 months ago
United States
A: Is it appropriate to use DESeq2 to analyse MinION data that's been mapped to a t
5 years, 11 months ago
WEHI, Melbourne, Australia
A: How to get t-statistic values using edgeR?
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Volcano plot labeling troubles
5 years, 11 months ago
Seattle, WA, United States
A: Rsamtools v 1.99.6 installation error
5 years, 11 months ago
United States
A: WGCNA - networking RNA seq gives only one module!
5 years, 11 months ago
The city by the bay
A: Some questions for remove batch effect by using mnnCorrect
5 years, 11 months ago
Australia/Melbourne
A: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5 years, 11 months ago
United States
A: limma voom: summary(decideTests(fit))
5 years, 11 months ago
United States
A: Gene Ontology link in aaf.handler() not working
5 years, 11 months ago
WEHI, Melbourne, Australia
A: limma voom Mean-variance trend plot: x-axis?
5 years, 11 months ago
The city by the bay
A: EdgeR between/within comparisons (3.5) with nested non-balanced data set
5 years, 11 months ago
United States
A: How to add my own Entrez Gene IDs rather than using the ones from a default pack
5 years, 11 months ago
The city by the bay
A: Usage of doubletCells() function before or after the batch correction?
5 years, 12 months ago
5 years, 12 months ago
WEHI, Melbourne, Australia
A: moderated p-values limma style from std.error, df, estimate data.
5 years, 12 months ago
United States
A: No method for coercing this S4 class to a vector, as trying to import my own dat
5 years, 12 months ago
United States
A: dtuScaledTPM vs lengthScaledTPM in DTU analysis
6 years ago
San Diego
A: Appropriate experimental design for differential expresion
6 years ago
The city by the bay
A: Experimental design RNAseq differential expression
6 years ago
The city by the bay
A: Can I ignore the warnings in limma show " Coefficients not estimable" after batc
6 years ago
United States
A: Limma - Using removeBatchEffect before differential expression analysis
6 years ago
The city by the bay
A: What are the methods to get count data per cell from single cell fastq given onl
6 years ago
Seattle, WA, United States
A: Using GenomicFeatures to extract the upstream and downstream region of a transcr
6 years, 1 month ago
The city by the bay
A: Limma model with different intercepts/references
6 years, 1 month ago
Wageningen University, Wageningen, the …
A: run LIMMA package encounts clariomdhumancdf error
6 years, 1 month ago
WEHI, Melbourne, Australia
A: Featurecount -- normalized Path error
6 years, 1 month ago
United States
A: DESeq2 w. pathway/network info as a prior knowledge
6 years, 1 month ago
The city by the bay
A: What is the "linear model" part used for in Limma?
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