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Created An Answer With At Least 3 Up-Votes
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following contributors:
9 years, 1 month ago
WEHI, Melbourne, Australia
A: Suggestions for non-specific filtering criteria with limma
9 years, 1 month ago
WEHI, Melbourne, Australia
A: Error when fitting linear model with technical replicates and blocking variable
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Interpretation of mroast gene set analysis in R and appropriate use of the funct
9 years, 2 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
WEHI, Melbourne, Australia
A: FDR and padj in deseq and edger
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
WEHI, Melbourne, Australia
A: Estimating and removing batch effects from rna-seq dataset
9 years, 3 months ago
WEHI, Melbourne, Australia
A: Limma camera function never gives any differentially expressed gene sets
9 years, 3 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
WEHI, Melbourne, Australia
Correct assumptions of using limma moderated t-test
9 years, 3 months ago
WEHI, Melbourne, Australia
GoSeq: Wallenius 264 overrepresented sampling 0?
9 years, 3 months ago
WEHI, Melbourne, Australia
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
9 years, 3 months ago
WEHI, Melbourne, Australia
Difference in Goodness of fit when applying limma to one-colour vs. two-colour arrays
9 years, 3 months ago
WEHI, Melbourne, Australia
Adjust p-values of a matrix of p-values
9 years, 3 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 3 months ago
WEHI, Melbourne, Australia
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
9 years, 3 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
9 years, 3 months ago
WEHI, Melbourne, Australia
How to read single red channel data with Limma
9 years, 3 months ago
WEHI, Melbourne, Australia
How to use normalized values by EDASeq in edgeR?
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Technical normalization of single channel array data with Limma?
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Why is the "detection" value given by lumidat the inverse (i.e. 1-x) of the "det
9 years, 4 months ago
WEHI, Melbourne, Australia
A: How to carry out a gene set analysis using custom gene sets?
9 years, 5 months ago
WEHI, Melbourne, Australia
A: Standard error and effect size from Limma
9 years, 6 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 6 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 6 months ago
WEHI, Melbourne, Australia
A: Variance filtering prior to RNA-seq differential expression
9 years, 6 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 6 months ago
WEHI, Melbourne, Australia
A: Using limma when continuous and categorical confounders are present at the same
9 years, 6 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 6 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 6 months ago
WEHI, Melbourne, Australia
A: limma-voom when testing differential expression of a subset of genes.
9 years, 6 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 7 months ago
WEHI, Melbourne, Australia
A: voom + removeBatchEffect + gene clustering
9 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 7 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 7 months ago
WEHI, Melbourne, Australia
A: EdgeR: batches and samples over-specify system, how to contrast un-modeled varia
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