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following contributors:
7 years, 7 months ago
WEHI, Melbourne, Australia
Representative gene expression value in one condition with several replicates
7 years, 7 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
7 years, 7 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
7 years, 8 months ago
WEHI, Melbourne, Australia
A: Samples without pair in paired design experiment
7 years, 9 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
7 years, 9 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
7 years, 9 months ago
WEHI, Melbourne, Australia
A: Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tes
7 years, 9 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
WEHI, Melbourne, Australia
A: threshold to filter lowly expressed genes
7 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
WEHI, Melbourne, Australia
A: Differential binding of ATAC-seq data with no replicates
7 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
7 years, 11 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 11 months ago
WEHI, Melbourne, Australia
A: illumina ht-12 v4 expression beadchip
7 years, 11 months ago
WEHI, Melbourne, Australia
A: correction for batch effects and paired-design of RNA-seq samples
7 years, 11 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 12 months ago
WEHI, Melbourne, Australia
A: about model.matrix in limma or edgeR
7 years, 12 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years ago
WEHI, Melbourne, Australia
A: One replicate (one-color OR two-color) is enough to use Limma?
8 years, 1 month ago
WEHI, Melbourne, Australia
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
8 years, 2 months ago
WEHI, Melbourne, Australia
A: how to deal with technical replicates in limma camera
8 years, 2 months ago
WEHI, Melbourne, Australia
A: Test whether expression levels of two gene sets are significantly different
8 years, 3 months ago
WEHI, Melbourne, Australia
A: limma; Only fit list of certain genes/ filter eSet
8 years, 3 months ago
WEHI, Melbourne, Australia
A: How featureCounts define the gene length
8 years, 3 months ago
WEHI, Melbourne, Australia
A: modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
8 years, 4 months ago
WEHI, Melbourne, Australia
A: Explanation of an ANOVA approach of multiple coefficients in limma with topTable
8 years, 5 months ago
WEHI, Melbourne, Australia
A: illumina gene expression array by limma
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Please share me your helpful comments with edgeR analysis without replicate
8 years, 6 months ago
WEHI, Melbourne, Australia
A: Why does the filtering of lowly expressed genes for analysis with edgeR must be
8 years, 6 months ago
WEHI, Melbourne, Australia
A: Filtering lowly expressed genes in voom-limma analysis
8 years, 6 months ago
WEHI, Melbourne, Australia
A: Counting ambiguously mapped reads per feature
8 years, 7 months ago
WEHI, Melbourne, Australia
A: limma & design matrix: for 2-color dyes and 4-comparisons?
8 years, 7 months ago
WEHI, Melbourne, Australia
A: How does edgeR compare to lme4?
8 years, 7 months ago
WEHI, Melbourne, Australia
A: GSEA-like enrichment score calculation
8 years, 8 months ago
WEHI, Melbourne, Australia
A: microarray data analsis with limma?
8 years, 9 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
8 years, 9 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
8 years, 9 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
8 years, 9 months ago
WEHI, Melbourne, Australia
Is filtering necessary to extract significant DE genes with limma ?
8 years, 9 months ago
WEHI, Melbourne, Australia
Test whether expression levels of two gene sets are significantly different
8 years, 9 months ago
WEHI, Melbourne, Australia
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
8 years, 9 months ago
WEHI, Melbourne, Australia
Effects of continuous variable with adjustment for gender
8 years, 9 months ago
WEHI, Melbourne, Australia
Calculating a p value by permutation analysis
8 years, 9 months ago
WEHI, Melbourne, Australia
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
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