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Created An Answer With At Least 3 Up-Votes
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following contributors:
6 years, 6 months ago
The city by the bay
A: Limma weights, non-specific interactions
6 years, 6 months ago
The city by the bay
A: Problem with coefficients that are not estimable (limma)
6 years, 7 months ago
The city by the bay
A: EdgeR: Explaning dispersion types to newbies
6 years, 7 months ago
The city by the bay
A: edgeR: setting up proper contrasts for interactions
6 years, 8 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 8 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 8 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 9 months ago
The city by the bay
A: Building contrasts for combined treatment groups to compare to a control
6 years, 9 months ago
The city by the bay
A: edgeR: Choice of reference group in nested model
6 years, 10 months ago
The city by the bay
A: Difficulty in finding DEG using TCGA data from FireBrowse
6 years, 11 months ago
The city by the bay
A: edgeR cpm() function with and without log2
6 years, 11 months ago
The city by the bay
A: How to find the degree of freedom, effect size and the variance of effect size f
7 years ago
The city by the bay
A: Best way to design a contrast matrix for analysis of dataset
7 years, 2 months ago
The city by the bay
A: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat
7 years, 2 months ago
The city by the bay
A: Paired Test - Design Matrix and Contrast Matrix Voom and Limma
7 years, 2 months ago
The city by the bay
A: edgeR: Should there be a normalization step for CRISPR screens? How to deal with
7 years, 2 months ago
The city by the bay
A: How to use limma to do regularization for Ballgown
7 years, 3 months ago
The city by the bay
A: Is there are better way to improve the design via blocking or contrasts while us
7 years, 3 months ago
The city by the bay
A: Cannot create SingleCellExperiment object
7 years, 3 months ago
The city by the bay
A: edgeR effects of design on testing main effects and interactions
7 years, 3 months ago
The city by the bay
A: edgeR long vectors support when normalizing abundance matrix
7 years, 4 months ago
The city by the bay
A: Differential gene expression for multi-factorial experiment using edgeR
7 years, 5 months ago
The city by the bay
A: edgeR design between and within subjects
7 years, 6 months ago
The city by the bay
A: Designing a model matrix and further process?
7 years, 6 months ago
The city by the bay
A: Cell type specific cell markers for Seurat based analysis.
7 years, 6 months ago
The city by the bay
A: Accounting for both categorical and numerical possible confounding variables in
7 years, 7 months ago
The city by the bay
goana limma- extract list of DE genes and genes in the enriched GO terms?
7 years, 7 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 7 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 7 months ago
The city by the bay
csaw - workflow to incorporate input/control samples?
7 years, 7 months ago
The city by the bay
differential expression analysis of htseq data with edgeR/voom
7 years, 7 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
7 years, 7 months ago
The city by the bay
edgeR: Should there be a normalization step for CRISPR screens? How to deal with bottlenecked screens?
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