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Created An Answer With At Least 3 Up-Votes
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following contributors:
6 years ago
The city by the bay
limma-voom duplicateCorrelation once or twice, difference?
6 years ago
The city by the bay
Filtering read counts matrix: how to deal with duplicated gene symbols, different ENSEMBL ids
6 years ago
The city by the bay
EdgeR between/within comparisons (3.5) with nested non-balanced data set
6 years ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years ago
The city by the bay
Correct use of tximport in combination with edgeR cpm()
6 years ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 1 month ago
The city by the bay
A: scran: Are the log counts expression comparable among different genes within a s
6 years, 1 month ago
The city by the bay
A: RNAseq analysis: what comes first, filtering or normalization
6 years, 1 month ago
The city by the bay
A: Gene ID to Gene Name/Symbol in loom files
6 years, 2 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 2 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 2 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 2 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 3 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 3 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 3 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 3 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 3 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 3 months ago
The city by the bay
A: limma-voom duplicateCorrelation once or twice, difference?
6 years, 3 months ago
The city by the bay
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
6 years, 3 months ago
The city by the bay
A: How to calculate average log2 CPM with batch effect?
6 years, 4 months ago
The city by the bay
A: limma Multi-level Experiments correcting for continuous covariates
6 years, 5 months ago
The city by the bay
A: Limma example where one comparison gives different results depending on the matr
6 years, 5 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 5 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 5 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 5 months ago
The city by the bay
A: Creating a correct limma model with respect to contrast matrix and design matrix
6 years, 5 months ago
The city by the bay
A: Can limma/other DE algorithms be used for differential analysis of chemical desc
6 years, 6 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 6 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 6 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 6 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
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