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following contributors:
6 years, 5 months ago
United States
How does DESeq2 handle zero counts in one condition?
6 years, 5 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
6 years, 5 months ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
6 years, 5 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 5 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
6 years, 5 months ago
United States
A: DESeq2 error: "vector: cannot make a vector of mode 'S4'"
6 years, 5 months ago
WEHI, Melbourne, Australia
A: ERROR: No residual degrees of freedom in linear model fits
6 years, 5 months ago
The city by the bay
A: Limma weights, non-specific interactions
6 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years, 5 months ago
United States
A: [DESeq2] Extracting results based on set thresholds
6 years, 5 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
6 years, 5 months ago
Australia/Melbourne
C: File not found error when using dupRadar::analyzeDuprates
6 years, 5 months ago
United States
A: lfcShrink behavior with homogeneous expression dataset
6 years, 5 months ago
6 years, 5 months ago
United States
A: WGCNA: Understanding module-trait correlations
6 years, 6 months ago
Australia
Rsubread install fails, "unable to load shared object Rsubread.so"
6 years, 6 months ago
The city by the bay
A: Problem with coefficients that are not estimable (limma)
6 years, 6 months ago
United States
A: bpaggregate with formula returns strange error message
6 years, 6 months ago
United States
A: DESeq2: possible to compare read counts at single nucleotide level ?
6 years, 6 months ago
Mitchell Cancer Institute, Mobile AL, U…
Microarray analysis of .idat files to identify degs
6 years, 6 months ago
EMBL Heidelberg
A: How can I get all installed Bioconductor packages?
6 years, 6 months ago
WEHI, Melbourne, Australia
A: Differential profile for only one normal - tumor pair
6 years, 6 months ago
Seattle, WA, United States
A: How does GenomicFeature calculate 3'UTR?
6 years, 6 months ago
United States
A: problem for Using RNA-seq data-set in WGCNA
6 years, 6 months ago
CUNY Graduate School of Public Health a…
A: Horizontal integration of multi omic data, with continuous dependent variable
6 years, 6 months ago
WEHI, Melbourne, Australia
A: Using limma to model gene expression changes with age
6 years, 6 months ago
United States
A: Querying specific TCGA datasets through the MultiAssayExperiment R package
6 years, 6 months ago
The city by the bay
A: EdgeR: Explaning dispersion types to newbies
6 years, 6 months ago
United States
A: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
6 years, 6 months ago
The city by the bay
A: edgeR: setting up proper contrasts for interactions
6 years, 6 months ago
CUNY Graduate School of Public Health a…
A: MultiAssayExperiment wideformat operations
6 years, 7 months ago
Heidelberg
Possible to incorporate the sign or direction of an effect in the IHW covariate?
6 years, 7 months ago
EMBL European Molecular Biology Laborat…
C: Anomal pvalue distribution and qvalue calculation
6 years, 7 months ago
WEHI, Melbourne, Australia
A: Up/Down Regulated GeneList from edgeR and R
6 years, 7 months ago
University of Connecticut
SNP location annotation problem in "VariantAnnotation" package
6 years, 7 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years, 7 months ago
WEHI, Melbourne, Australia
using duplicateCorrelation with limma+voom for RNA-seq data
6 years, 7 months ago
WEHI, Melbourne, Australia
Using limma to model gene expression changes with age
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