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Created An Answer With At Least 3 Up-Votes
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following contributors:
5 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
[Limma] Testing continuous variable with interaction
5 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
5 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
Finding DE genes from RNA-seq data
5 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
5 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
6 years ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
6 years, 1 month ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
6 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
6 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
A: Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
6 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
A: Fitting Gamma GLMs for examining differential expression
7 years ago
Icahn School of Medicine at Mount Sinai…
A: removeBatchEffect options: design and covariates
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
ribosome profiling analysis with different dispersions
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
edger glmQLFit mix glmLRT
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
How does the function model.matrix (to define experimental design) really works ?
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
A: limma: same data in different formats produces different DEG-analysis results
7 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
A: What's the relationship between "design" and "contrasts"?
7 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
A: edgeR RNA-seq analysis using glm
7 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
A: DE for genes with very low counts using limma.
8 years ago
Icahn School of Medicine at Mount Sinai…
A: [Limma] Testing continuous variable with interaction
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Ribosome profiling analysis in DEseq2/limma
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Accounting for 5'/3' Bias in DESeq 2
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
DESeq2 how to define my conditions when I want the results comparing a subset of samples
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
edger, trended or common dispersion
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Usability of ERCC spike-ins in standard RNAseq experiments
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Using multiple tools for differential gene expression analysis as validation
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
Low percentage of assigned fragments with FeatureCounts
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
On the relationship between design and contrasts
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
DE for genes with very low counts using limma.
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
How to use removeBatchEffect for removing effect of multiple confounding variables
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
edgeR RNA-seq analysis using glm
8 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
8 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
8 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
8 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
8 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
8 years, 11 months ago
Icahn School of Medicine at Mount Sinai…
EdgeR Multifactorial design with batch effect-trouble with defining contrasts
9 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
EdgeR Multifactorial design with batch effect-trouble with defining contrasts
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