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Created An Answer That Has Been Accepted
Awarded 5054 times (see all awards). Earned by the
following contributors:
5 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
A: LIMMA dupcor() function time issue.
5 years, 12 months ago
Icahn School of Medicine at Mount Sinai…
Finding DE genes from RNA-seq data
5 years, 12 months ago
Icahn School of Medicine at Mount Sinai…
Limma validity for only hundreds of genes/metabolites
6 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
Limma validity for only hundreds of genes/metabolites
6 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
Limma validity for only hundreds of genes/metabolites
6 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
Limma validity for only hundreds of genes/metabolites
6 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
A: Question on performing/interpretation results ANOVA-like analysis using limma
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
Duplicate Correlation with technical replicates
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
How does the function model.matrix (to define experimental design) really works ?
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
Limma validity for only hundreds of genes/metabolites
7 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
A: limma for Paired Samples vs. lme
7 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
A: What is the correct contrast matrix if one treatment must be compared to both of
8 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
A: What's the rationale for using the negative binomial distribution to model read
8 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
A: Using multiple tools for differential gene expression analysis as validation
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
normalized data by DESeq2 look suspicious
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
On the relationship between design and contrasts
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Adjusting for confounders along with paired testing using edgeR
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
edgeR RNA-seq analysis using glm
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Duplicate Correlation with technical replicates
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
ribosome profiling analysis with different dispersions
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
Technical and biological replates in BitSeq
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
nested modeling for unequal groups with edgeR
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
edger, trended or common dispersion
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
DESeq2 how to define my conditions when I want the results comparing a subset of samples
8 years, 8 months ago
Icahn School of Medicine at Mount Sinai…
A: High number of significant DE genes with low baseMean, is this abnormal?
8 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
normalized data by DESeq2 look suspicious
9 years ago
Icahn School of Medicine at Mount Sinai…
normalized data by DESeq2 look suspicious
9 years ago
Icahn School of Medicine at Mount Sinai…
A: edger, trended or common dispersion
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
normalized data by DESeq2 look suspicious
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
A: normalized data by DESeq2 look suspicious
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
edgeR (3.10.2) contrast question for experimental factors combined as a group
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
Technical and biological replates in BitSeq
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
ribosome profiling analysis with different dispersions
9 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
A: batch effect : comBat or blocking in limma ?
9 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
A: [DESeq2] normalization doesn't remove my mean-variance trend
9 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
9 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
9 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
9 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
Cannot find function treatDGE() in package edgeR?
9 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
A: Cannot find function treatDGE() in package edgeR?
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