Scholar
Created An Answer That Has Been Accepted
Awarded 5060 times (see all awards). Earned by the
following contributors:
6 years, 8 months ago
United States
Unexpected differences in results from paired analysis with DESeq2
6 years, 8 months ago
United States
Analysis guidance for data inclusion in deseq2 analysis: data subsets vs contrasts
6 years, 8 months ago
United States
Add new columns to DESeqResults from text file by matching rownames.
6 years, 8 months ago
United States
A: Comparing means of VST tranformed RNA-Seq counts in different groups of samples
6 years, 8 months ago
United States
A: Analysis guidance for data inclusion in deseq2 analysis: data subsets vs contras
6 years, 9 months ago
United States
Analysis guidance for data inclusion in deseq2 analysis: data subsets vs contrasts
6 years, 9 months ago
United States
Unexpected differences in results from paired analysis with DESeq2
6 years, 9 months ago
United States
A: Deseq2 alternative splicing in understudied organism
6 years, 9 months ago
United States
A: processing of (salmon) gene counts for eqtl analysis
6 years, 9 months ago
United States
A: Differentially expressed genes detection between three classes with a batch effe
6 years, 9 months ago
United States
A: Unexpected differences in results from paired analysis with DESeq2
6 years, 10 months ago
United States
A: Question concerning the testing of interactions using the group design and the u
6 years, 10 months ago
United States
A: DESeq2: How to get sizeFactor per library when importing counts with tximport?
6 years, 10 months ago
United States
A: Meaning of the intercept when betaPrior is TRUE?
6 years, 11 months ago
United States
A: Does "FRY gene set tests" is possible using a DESEQ2 style analysis ?
6 years, 11 months ago
United States
A: tximport failing at importing TPM instead of FPKM
6 years, 11 months ago
United States
A: DESeq2-No replicates-Utility of log2fold shrunk values?
7 years ago
United States
A: Standard error of log2FC from DESeq in time series experiment
7 years ago
United States
A: compare one group to mean of two others in DESeq2 with betaprior=FALSE
7 years, 1 month ago
United States
A: DESeq2: Question about the alpha in summary() and results()
7 years, 1 month ago
United States
A: Is there a conceptual difference between vst/rlog transforms and lfcShrink?
7 years, 1 month ago
United States
A: TWO-way analysis with DESeq2 - obtaining p-values for the fixed factors and the
7 years, 1 month ago
United States
A: Opinions on DESeqDataSetFromMatrix rowSums minimum for ChIP and/or ATAC-seq
7 years, 2 months ago
United States
A: Applying replaceOutliers rather than throwing out genes when model includes cont
7 years, 2 months ago
United States
A: Deseq2 - Time-series data with 2 treatments and 1 control
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