Scholar
Created An Answer That Has Been Accepted
Awarded 5053 times (see all awards). Earned by the
following contributors:
2 years, 6 months ago
United States
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: LogFC values in edgeR - w/wo intercept
2 years, 6 months ago
WEHI, Melbourne, Australia
Answer: Question on RNA-Seq single sample data analysis in EdgeR
2 years, 7 months ago
Barcelona/Universitat Pompeu Fabra
Answer: How to run GSVA with partially NA genes
2 years, 7 months ago
WEHI, Melbourne, Australia
Answer: how to make a group to apply the data to CAMERA
2 years, 7 months ago
United States
Answer: Robust Multi-array Average could get negative value or not?
2 years, 7 months ago
Wageningen University, Wageningen, the …
Answer: UniprotKB AC/ID to Entrez ID Conversion
2 years, 7 months ago
Wageningen University, Wageningen, the …
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2 years, 7 months ago
United States
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
2 years, 7 months ago
Republic of Ireland
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
2 years, 7 months ago
United States
Answer: Quantile Normalization after rma or not?
2 years, 7 months ago
United States
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
2 years, 7 months ago
WEHI, Melbourne, Australia
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
2 years, 7 months ago
United States
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
2 years, 7 months ago
United States
Answer: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
2 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Handling NA values in limma's voom design matrix
2 years, 7 months ago
WEHI, Melbourne, Australia
Answer: Variance explained (coefficient of determination) in edgeR
2 years, 7 months ago
Germany
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
2 years, 7 months ago
Cambridge, UK
Answer: DiffBind always reverts to default normalization
2 years, 7 months ago
Seattle, WA, United States
Answer: Request : Add Chinese Spring Wheat genome to BSgenome
2 years, 7 months ago
United States
Answer: Using SingleR for Single cell annotation with BulkRNASeq
2 years, 7 months ago
United States
Answer: Get corresponding gene id for probe id from Affymetrix array
2 years, 7 months ago
United States
Answer: edgeR: How to display/plot individual miRNAs found to be differentialy expressed
2 years, 7 months ago
United States
Answer: IsoformSwitchAnalyzeR: object 'analysisAllIsoformsWithoutORF' not found
2 years, 8 months ago
United States
Answer: Extracting Score/Coverage From GRange Object
2 years, 8 months ago
Netherlands
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Large difference in PCA plot based on LCPM (log counts per million) and VST (va
2 years, 8 months ago
India
Answer: Using SingleR for Single cell annotation with BulkRNASeq
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: How to make design matrices or compare contrast in limma
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: Limma vs. lm for methylation data
2 years, 8 months ago
United States
Answer: Questions regarding failing tximeta import for swish
2 years, 8 months ago
Miami, US
Answer: GDCprepare of RNAseq counts produces error
2 years, 8 months ago
Barcelona/Universitat Pompeu Fabra
Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2 years, 8 months ago
WEHI, Melbourne, Australia
Answer: how to change axis labeling in limma density plot
2 years, 8 months ago
United States
Answer: DESeq2 With Ratios from Nascent RNA-seq (Conversion Rate from slamdunk)
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: Make samples symbols bigger in PCA / MDS analysis with plotMDS function
2 years, 9 months ago
WEHI, Melbourne, Australia
Answer: The number of controls versus treatment in differential expression analysis
2 years, 9 months ago
United States
Answer: Finding significant up-regulated and down-regulated genes given a log2FoldChange
2 years, 9 months ago
United States
Answer: The number of controls versus treatment in differential expression analysis
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