Scholar
Created An Answer That Has Been Accepted
Awarded 5053 times (see all awards). Earned by the
following contributors:
1 year, 11 months ago
WEHI, Melbourne, Australia
Answer: Limma repeated-measures model: Partial NA coefficients
1 year, 11 months ago
United States
Answer: Normalizing Salmon output count data matrix using DESeq2
1 year, 12 months ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
2 years ago
Cambridge, UK
Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
2 years ago
WEHI, Melbourne, Australia
Answer: limma: R-squared for time-series data
2 years ago
Germany / Heidelberg / DKFZ
Answer: ComplexHeatmap - z-score color coding failed
2 years ago
WEHI, Melbourne, Australia
Answer: Limma, Log2FC and pvalue changing depending on the order of the samples.
2 years ago
EMBL Heidelberg
Answer: How to use a specific Bioconductor version in custom Dockerfile
2 years ago
WEHI, Melbourne, Australia
Answer: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2 years ago
WEHI, Melbourne, Australia
Answer: Does negative corfit$consensus cause issues while fitting a model in limma
2 years ago
United States
Answer: How to interpret DESeq2's padj after setting lfcThreshold and the log2FC is grea
2 years ago
United States
Answer: how can I add a label for granges using the geom_rect ?
2 years ago
WEHI, Melbourne, Australia
Answer: Too many differentially expressed miRNA with limma
2 years ago
United States
Answer: Too many differentially expressed miRNA with limma
2 years, 1 month ago
United States
Answer: Simple queryAE command returning "Error: 1: Document is empty"
2 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Rsubread featureCounts outputs dozens of temp files, no counts
2 years, 1 month ago
United States
Answer: error loading kallisto output in tximport
2 years, 1 month ago
Barcelona/Universitat Pompeu Fabra
Answer: 'combined score' calculation with singscore vs gsva
2 years, 1 month ago
United States
Answer: system.file() failed to load .gmt file.
2 years, 1 month ago
WEHI, Melbourne, Australia
Answer: How to visaulize RNAseq data with edgeR, limma, ...?
2 years, 1 month ago
University of Oxford
Answer: Errors when plotting data using heatmap_GO (GOexpress)
2 years, 2 months ago
Germany
Answer: What is the correct way to import transcript abundances from 3' Quantseq results
2 years, 2 months ago
United States
Answer: Error in dimnamesGets(x, value) when trying to read data using Seurat package
2 years, 2 months ago
Germany
Answer: Removing metadata rows containing NA values in GRanges
2 years, 2 months ago
Seattle, WA, United States
Answer: Biostrings multiple pattern match
2 years, 2 months ago
United States
Answer: getSeq failing with DNAStringSet and GRanges
2 years, 2 months ago
Wageningen University, Wageningen, the …
Answer: Limma adj.p.value the same for many different p.values
2 years, 2 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Question on performing filtering by gene expression on a normalized matrix in li
2 years, 3 months ago
United States
Answer: Error message from protein coding prediction with VariantAnnotation
2 years, 3 months ago
The city by the bay
Answer: Efficiently working with HDF5-backed SingleCellExperiments
2 years, 3 months ago
Cambridge, UK
Answer: DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
2 years, 3 months ago
WEHI, Melbourne, Australia
Answer: limma::goana - "Invalid value for odds"
2 years, 3 months ago
MSKCC | New York, NY
Answer: How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable fo
2 years, 3 months ago
United States
Answer: biomaRt finding transcript lenghts
2 years, 3 months ago
United States
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
2 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Selecting individual samples from tximport and DGE matrix design with missing bi
2 years, 3 months ago
United States
Answer: DESeq2 contrasts using all relevant samples vs all samples
2 years, 3 months ago
United States
Answer: Log2FC values slightly higher in some genes after DESeq2 shrinkage
2 years, 3 months ago
United States
Answer: [BigWigFile] import as RLE vs default and length comparaison
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