Scholar
Created An Answer That Has Been Accepted
Awarded 5059 times (see all awards). Earned by the
following contributors:
5 years, 10 months ago
United States
A: Turn off the functions of estimating dispersions and gene-wise dispersion estima
5 years, 10 months ago
United States
A: Deactivate svalue=T in lfcShrink - DESeq2 - apeglm
5 years, 10 months ago
United States
A: Differential Expression Analysis for Single Population RNASeq in Deseq2
5 years, 10 months ago
United States
A: Extracting within subject effect in a between and within subject model with DESe
5 years, 10 months ago
United States
A: Tximport error (probably annotation lowercase incompatibility)
5 years, 10 months ago
United States
A: quant.sf files and tximport, transcripts not recognized
5 years, 10 months ago
United States
A: What is the biological meaning of genes with FC = 0 after shrinkage
5 years, 11 months ago
United States
A: model matrix design for DESeq2 for use with lfcShrink function
5 years, 11 months ago
United States
A: Finding genes that are expressed only in one condition within a contrast
5 years, 11 months ago
United States
A: How to extract factor levels of coldata from deseq object?
5 years, 11 months ago
United States
A: Why did I get NA p-values in DESeq with continuous variable?
5 years, 11 months ago
United States
A: tximport: question concerning 'bias corrected counts without an offset' method
5 years, 12 months ago
United States
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
6 years ago
United States
A: Common differentially expressed genes between two cell lines
6 years ago
United States
A: DESeq2 design with different cell lines and disease status
6 years ago
United States
A: Error in nbinomLRT while trying to follow time course analysis
6 years ago
United States
A: Unable to find an inherited method for function 'results' for signature '"DESeqD
6 years ago
United States
A: what should I do with many zero counts from Salmon quantification
6 years ago
United States
A: DeSeq2 Design for multiple cell lines, medias, vectors
6 years ago
United States
Multiple groups and two methods to analyse them with DESeq2
6 years ago
United States
Correlation of gene expression values using tpms and normalized counts
6 years ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years ago
United States
Unable to find an inherited method for function 'results' for signature '"DESeqDataSet"'
6 years ago
United States
What is the biological meaning of genes with FC = 0 after shrinkage
6 years ago
United States
Change lower bound 'optim' function in DESeq2::unmix() to 0.001 to prevent error
6 years ago
United States
How to extract factor levels of coldata from deseq object?
6 years ago
United States
DESeq2::sizeFactors() function does not output the sizeFactor table.
6 years ago
United States
Should I use alpine and can I convert the output back to counts?
6 years ago
United States
Using alternative LFC shrinkage methods for computing p-values in DESeq2
6 years ago
United States
Add new columns to DESeqResults from text file by matching rownames.
6 years ago
United States
Altering design following DESeqDataSetFromMatrix and DESeq
6 years ago
United States
tximport error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE
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