Scholar
Created An Answer That Has Been Accepted
Awarded 5059 times (see all awards). Earned by the
following contributors:
5 years, 4 months ago
United States
A: Responder Vs Non-Responders Paired Comparison DESeq2
5 years, 4 months ago
United States
A: Silent error in tximport after upgrade to R 3.6.1
5 years, 5 months ago
United States
A: DEseq2 resultsNames doesn not reproduce the right comparisons
5 years, 5 months ago
United States
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
5 years, 5 months ago
United States
A: DESeq2 multiple group comparison (ANOVA) with batch effect
5 years, 5 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 5 months ago
United States
Correlation of gene expression values using tpms and normalized counts
5 years, 5 months ago
United States
Multiple groups and two methods to analyse them with DESeq2
5 years, 5 months ago
United States
A: the normalization methods of MRN and TMM methods supplied by DESeq2 and edgeR
5 years, 5 months ago
United States
Correlation of gene expression values using tpms and normalized counts
5 years, 5 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 5 months ago
United States
A: Variance stabilising transformation for machine learning
5 years, 5 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
A: understanding DEseq2 interactions before/after releveling the baseline
5 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
A: Multifactor design in DESeq2 - infection effect over time on three different pla
5 years, 6 months ago
United States
A: DESeq2: Sample outlier patterns 'switching' after normalization
5 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
A: DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names i
5 years, 6 months ago
United States
A: Deciphering Wilkinson Notation and Predictor Variables
5 years, 6 months ago
United States
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
5 years, 6 months ago
United States
A: DESeq2: name and contrast arguments return partially different results under spe
5 years, 7 months ago
United States
A: Using altHypothesis with shrunken LFC values in DESeq2
5 years, 7 months ago
United States
A: Error in summary.DESeqResults(res) : could not find function "summary.DESeqResu
5 years, 7 months ago
United States
A: Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (R
5 years, 7 months ago
United States
A: DESeq2 positive results for genes with high samples counts dispersion
5 years, 7 months ago
United States
A: Is the data after variance stabilising transformation (blind = FALSE) already co
5 years, 8 months ago
United States
C: DESeq2 analysis of no-normalized data resulted in biased results
5 years, 8 months ago
United States
A: Using alternative LFC shrinkage methods for computing p-values in DESeq2
5 years, 8 months ago
United States
A: Multiple groups and two methods to analyse them with DESeq2
5 years, 8 months ago
United States
A: Normalize within-/between-samples RNA-seq counts to weight networks
5 years, 8 months ago
United States
A: DESeq2 for differential expression between species
5 years, 8 months ago
United States
A: DESEQ2 design matrix for double knockout interaction with condition
5 years, 8 months ago
United States
A: Correlation of gene expression values using tpms and normalized counts
5 years, 8 months ago
United States
A: Differential expression between groups with zero counts in DESEQ2
5 years, 9 months ago
United States
A: What is the best deseq2 design for this situtation?
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