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Created An Answer That Has Been Accepted
Awarded 5057 times (see all awards). Earned by the
following contributors:
5 years, 6 months ago
WEHI, Melbourne, Australia
A: Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
A: Finding genes in a gene set detected by ROAST (or FRY) in limma
5 years, 6 months ago
WEHI, Melbourne, Australia
A: Difference of difference, paired design
5 years, 7 months ago
WEHI, Melbourne, Australia
A: MDS plotting within the limma/voom workflow
5 years, 7 months ago
WEHI, Melbourne, Australia
A: How to find out the genes that changes in expression by using gene level express
5 years, 8 months ago
WEHI, Melbourne, Australia
A: FDR and mixed FDR in limma fry()
5 years, 8 months ago
WEHI, Melbourne, Australia
A: RNA-Seq Workflow Example (not "airway") for R
5 years, 9 months ago
WEHI, Melbourne, Australia
A: Function kegga not working for species other than the conventional ones - Pathwa
5 years, 9 months ago
WEHI, Melbourne, Australia
A: subread gives segfaults when supplied with falsely-identified paired end reads
5 years, 9 months ago
WEHI, Melbourne, Australia
A: How to add my own Entrez Gene IDs rather than using the ones from a default pack
5 years, 9 months ago
WEHI, Melbourne, Australia
A: No method for coercing this S4 class to a vector, as trying to import my own dat
5 years, 10 months ago
WEHI, Melbourne, Australia
A: barcodeplot how to increase the font size
5 years, 10 months ago
WEHI, Melbourne, Australia
A: Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Dealing with NA values from mass spec data using Limma, NA values.
5 years, 11 months ago
WEHI, Melbourne, Australia
Answer: VOOM vs VSN vs log2 to transform proteome data before LIMMA analysis
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Making sense out of makeContrasts and using coefficents for contrasts
5 years, 11 months ago
WEHI, Melbourne, Australia
A: How do you obtain the R - squared value from the NB line produced in plotMeanVar
5 years, 11 months ago
WEHI, Melbourne, Australia
A: Conduct likelihood ratio tests for a variable that isn't explicitly defined by m
5 years, 11 months ago
WEHI, Melbourne, Australia
A: How to calculate log2 fold change between two groups in a microarray study
5 years, 11 months ago
WEHI, Melbourne, Australia
A: LIMMA dupcor() function time issue.
6 years ago
WEHI, Melbourne, Australia
A: Limma design matrix separate channel analysis with same control
6 years ago
WEHI, Melbourne, Australia
A: How to find the expression values of genes matched by multiple probes in 2-chann
6 years ago
WEHI, Melbourne, Australia
A: Using GOseq for custom gene set enrichment test
6 years ago
WEHI, Melbourne, Australia
How to find out the genes that changes in expression by using gene level expression data matrix?
6 years ago
WEHI, Melbourne, Australia
subread gives segfaults when supplied with falsely-identified paired end reads
6 years ago
WEHI, Melbourne, Australia
Using GOseq for custom gene set enrichment test
6 years ago
WEHI, Melbourne, Australia
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
6 years ago
WEHI, Melbourne, Australia
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
6 years ago
WEHI, Melbourne, Australia
limma-voom duplicateCorrelation once or twice, difference?
6 years ago
WEHI, Melbourne, Australia
Odd P-value distribution in edgeR on RRBS data
6 years ago
WEHI, Melbourne, Australia
Volcanoplot with limma - RAW P-values or Adj.P-Values
6 years ago
WEHI, Melbourne, Australia
How do you obtain the R - squared value from the NB line produced in plotMeanVar ?
6 years ago
WEHI, Melbourne, Australia
Making sense out of makeContrasts and using coefficents for contrasts
6 years ago
WEHI, Melbourne, Australia
Conduct likelihood ratio tests for a variable that isn't explicitly defined by matrix.model
6 years ago
WEHI, Melbourne, Australia
Removing continuous covariate effects in limma analysis
6 years ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
6 years ago
WEHI, Melbourne, Australia
Finding genes respond differently to treatment between many genotype comparison
6 years ago
WEHI, Melbourne, Australia
Performing differential gene analysis on RT PCR experimental data
6 years ago
WEHI, Melbourne, Australia
Array Normalization on focussed array in Limma using R
6 years ago
WEHI, Melbourne, Australia
How to add my own Entrez Gene IDs rather than using the ones from a default package?
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