Scholar
Created An Answer That Has Been Accepted
Awarded 5059 times (see all awards). Earned by the
following contributors:
4 years, 6 months ago
United States
A: What are the steps to use a complex model of Allelic imbalance through apeglm
4 years, 6 months ago
United States
A: tximport samples.txt file mandatory vs. optional colnames?
4 years, 6 months ago
United States
A: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
4 years, 6 months ago
United States
A: Full length single-cell RNA-seq - tximport output for downstream analysis
4 years, 7 months ago
United States
A: DESeqDataSetFromTximport with and without offset
4 years, 7 months ago
United States
A: Tximport missing values for group summarizing counts
4 years, 7 months ago
United States
A: Custom Functional for automated DESeq2 running
4 years, 7 months ago
United States
A: Why s-values instead of p-values with non-default lfcThreshold and apeglm shrink
4 years, 7 months ago
United States
A: DESeq2: Clarification on independent filtering threshold values
4 years, 9 months ago
United States
A: Placing groups in one or in different DESeq2 objects
4 years, 9 months ago
United States
A: Is this an issue? "Error in (function (x) : attempt to apply non-function" when
4 years, 9 months ago
United States
A: Reverse calculate counts using DESeq2 normalised values
4 years, 10 months ago
United States
A: rlog transformation for downstream analyses in DESeq2: Importance of experiment
4 years, 10 months ago
United States
A: Using DESeq2 for normalization of dataset with no replicates
4 years, 11 months ago
United States
A: RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly diff
4 years, 11 months ago
United States
A: The basis for the full rank design matrix requirement in DESeq2
4 years, 11 months ago
United States
A: Difference in dimensionality reduction plots based on DESeq2 R package and core
4 years, 11 months ago
United States
A: DESeq2 - problem with inferring correct results.
5 years ago
United States
A: apparent DESeq2::DESeq() performance decline since v1.22.2
5 years, 1 month ago
United States
A: Correlate DESeq2 variance stabilised counts with clinical covariates
5 years, 2 months ago
United States
A: Does DESeq2 Data_transformation (vsd or rld) Change Clustering (and PCA_plot) Re
5 years, 2 months ago
United States
A: Still lots of NA adjusted p-values in DESeq2 after eliminating Cook's distance c
5 years, 2 months ago
United States
A: Error when providing contrast coefficients to lfcShrink() of DESeq2 package
5 years, 2 months ago
United States
A: Can tximport be used to mitigate sample specific length biases?
5 years, 2 months ago
United States
A: DESeq2: DE Analysis with very imbalanced samples per condition
5 years, 2 months ago
United States
A: DESeq2 2x2 factorial design: find genes unique to factor A?
5 years, 2 months ago
United States
A: Cannot find header.json in salmon index directory
5 years, 3 months ago
United States
A: Why does dispersion estimation in DESeq2 depend on the design formula?
5 years, 3 months ago
United States
A: DESeq2 outlier replacement with respect to continuous variable
5 years, 3 months ago
United States
A: Very variable samples vs similar samples in the same dataset
5 years, 4 months ago
United States
A: Modelling a multiplicative batch effect with DESeq2
5 years, 4 months ago
United States
A: Deseq metadata bug on repeat runs with parallel
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