Scholar
Created An Answer That Has Been Accepted
Awarded 5057 times (see all awards). Earned by the
following contributors:
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Self-contained gene set testing with DESeq2 results
4 years, 1 month ago
WEHI, Melbourne, Australia
Answer: Limma: extend reading raw Illumina files, with Gene Omnbus Expression formats
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Addressing the batch effect in multifactor experiment
4 years, 2 months ago
WEHI, Melbourne, Australia
Answer: Normalization for within-sample gene correlation
4 years, 3 months ago
WEHI, Melbourne, Australia
Answer: Paired analysis adjusted for RIN value
4 years, 3 months ago
WEHI, Melbourne, Australia
Answer: catchSalmon for tx-level DE
4 years, 4 months ago
WEHI, Melbourne, Australia
A: Reasoning behind weighting of of exon expression values in limma diffSplice func
4 years, 4 months ago
WEHI, Melbourne, Australia
A: What is the correct use of removeBatchEffect's design parameter
4 years, 5 months ago
WEHI, Melbourne, Australia
A: eisaR settings for three biological replicates
4 years, 6 months ago
WEHI, Melbourne, Australia
A: edgeR batch effect correction for unevenly distributed groups
4 years, 7 months ago
WEHI, Melbourne, Australia
A: Differential methylation analysis and paired samples
4 years, 7 months ago
WEHI, Melbourne, Australia
A: How to create a matrix from a set of files containing counts for a set of attri
4 years, 8 months ago
WEHI, Melbourne, Australia
A: Limma multi-group analysis - General F-test
4 years, 9 months ago
WEHI, Melbourne, Australia
A: comparing one sample to multiple controls
4 years, 11 months ago
WEHI, Melbourne, Australia
A: Limma when to use zero intercept
4 years, 11 months ago
WEHI, Melbourne, Australia
A: Finding enriched pathways from a gene list.
4 years, 11 months ago
WEHI, Melbourne, Australia
A: Query relating pathway enrichment analysis for DEGs using KEGG or any other data
4 years, 11 months ago
WEHI, Melbourne, Australia
A: All genes display positive fold change in topTable results after limma
5 years ago
WEHI, Melbourne, Australia
A: edgeR - design matrix and contrasts for paired data problems
5 years ago
WEHI, Melbourne, Australia
A: edgeR design matrix and contrasts for comparisons both between and within subjec
5 years ago
WEHI, Melbourne, Australia
A: How to make grouping and contrast for multfactor design?
5 years ago
WEHI, Melbourne, Australia
A: How to ask limma to allow different variances for different treatment arms
5 years, 1 month ago
WEHI, Melbourne, Australia
A: Dealing with duplicated genes in camera gene set testing
5 years, 2 months ago
WEHI, Melbourne, Australia
A: Nested Random Effect in LIMMA: Is It Possible?
5 years, 2 months ago
WEHI, Melbourne, Australia
A: Analyse Microarray Data - AVG_Signal
5 years, 2 months ago
WEHI, Melbourne, Australia
A: Nested Interaction in edgeR and composition bias
5 years, 3 months ago
WEHI, Melbourne, Australia
A: DESeq2 VS edgeR DEG results different in analysis same data
5 years, 4 months ago
WEHI, Melbourne, Australia
A: Does edgeR need to specify reference group?
5 years, 4 months ago
WEHI, Melbourne, Australia
A: How adjusted p-values are calculated in limma
5 years, 4 months ago
WEHI, Melbourne, Australia
A: How to normalize RNA-seq data if majority of transcripts expected to be differen
5 years, 4 months ago
WEHI, Melbourne, Australia
A: scanBam and countBam end prematurely under Windows 10
5 years, 5 months ago
WEHI, Melbourne, Australia
A: edgeR default normalization method
5 years, 5 months ago
WEHI, Melbourne, Australia
A: How to create two columns for model matrix used in limma?
5 years, 5 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 5 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
A: Limma linear fit residual standard deviation calculation
5 years, 6 months ago
WEHI, Melbourne, Australia
Answer: goana and "No annotated genes found in universe" even with Entrez gene ids
5 years, 6 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
A: "Integrative transcriptomics" reveal or reveals?
5 years, 6 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
5 years, 6 months ago
WEHI, Melbourne, Australia
Rsubread, Error in featureCounts paired end
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6