Scholar
Created An Answer That Has Been Accepted
Awarded 5074 times (see all awards). Earned by the
following contributors:
4 years ago
United States
Answer: Using DESeq2 to identify changing transcriptional activity in a metagenome
4 years, 1 month ago
United States
Answer: How to reassign DESeqDataSet design to include newly added column to columnData
4 years, 1 month ago
United States
Answer: TxImport when quant.sf files have different index files
4 years, 1 month ago
United States
Answer: DEGpatterns and functional analysis of clusters
4 years, 1 month ago
United States
Answer: DESeq2: relevel() unsuccessfully setting control group
4 years, 1 month ago
United States
Answer: DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
4 years, 1 month ago
United States
Answer: Negative svalues from DESeq2 lfcShrink with ashr
4 years, 2 months ago
United States
Answer: Splitting multiple groups - three different ages
4 years, 2 months ago
United States
Answer: Using group instead of interaction term on a custom edited matrix
4 years, 2 months ago
United States
Answer: Gene Selection GTex for DESeq2 Analysis
4 years, 2 months ago
United States
Answer: Importing data into the DESeq2 pipeline using tximport
4 years, 2 months ago
United States
Answer: DEseq2: working with unbalanced number of sample in tumor study?
4 years, 2 months ago
United States
Answer: apeglm -- influence of reference level on logFC and svalues
4 years, 3 months ago
United States
Answer: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
4 years, 3 months ago
United States
Answer: Something strange in the ranking of genes by DESeq2
4 years, 4 months ago
United States
Answer: DESeq usage of transcript TPM after tximport
4 years, 4 months ago
United States
Answer: tximport with salmon bootstraps and edger/deseq2
4 years, 4 months ago
United States
Answer: DESEQ2 coldata creation from featureCounts and row.names length error
4 years, 5 months ago
United States
Answer: Different contrast coding strategies in DESeq2 produce slightly different output
4 years, 5 months ago
United States
Answer: Compare 3 RNASeq groups with no control in DESeq2
4 years, 5 months ago
United States
Answer: Calculate Cook's cutoff per comparison in DESeq2
4 years, 5 months ago
United States
Answer: VST Failing Error in estimateDispersionsFit(object, quiet = TRUE, fitType)
4 years, 5 months ago
United States
Answer: lfcShrink function for different comparison
4 years, 5 months ago
United States
Answer: How to shortlist the unaffected gene list from DESeq2 results
4 years, 5 months ago
United States
Answer: Different results if "treated/untreated" is switched to "untreated/treated" with
4 years, 6 months ago
United States
Answer: DESeq2: When to split multiple group samples for 'more' accurate sizefactors, di
4 years, 6 months ago
United States
A: Convergence of betas, iterations arguments with nbinomialWaldTest
4 years, 6 months ago
United States
A: one group against two other groups comparison using LRT test (pseudobulk approac
4 years, 6 months ago
United States
A: DEseq2: DESeq function not correcting for batch variable
4 years, 7 months ago
United States
A: How does the design formula affect dispersion estimate in DESeq2?
4 years, 8 months ago
United States
A: Design with blocking variable & factors of interest
4 years, 8 months ago
United States
A: Exceeding Over-dispersion parameter bbEstDisp
4 years, 8 months ago
United States
A: the results from normalized=TRUE and normalized = FALSE is the same
4 years, 8 months ago
United States
A: droplevels not working - error in DESeq() function
4 years, 8 months ago
United States
A: Variance stabilized values and batch correction
4 years, 8 months ago
United States
A: Cook's Distance Outliers: None reported in results table and "cooksCutoff" modif
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